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Abbruzzetti, S
,
Spyrakis F
,
BidonChanal A
,
Luque FJ
,
Viappiani C
. 2013.
Ligand migration through hemeprotein cavities: Insights from laser flash photolysis and molecular dynamics simulations
.
Physical Chemistry Chemical Physics. 15:10686-10701.
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Fradera, X
,
Cruz D LX
,
Silva CH
,
Gelpi JL
,
Luque FJ
,
Orozco M
. 2002.
Ligand-induced changes in the binding sites of proteins
.
Bioinformatics (Oxford, England). 18(7):939-948.
Abstract
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Bidon-Chanal, A
,
Marti MA
,
Crespo A
,
Milani M
,
Orozco M
,
Bolognesi M
,
Luque FJ
,
Estrin DA
. 2006.
Ligand-induced dynamical regulation of NO conversion in Mycobacterium tuberculosis truncated hemoglobin-N
.
Proteins. 64(2):457-464.
Abstract
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Jurinovich, S
,
Viani L
,
Curutchet C
,
Mennucci B
. 2015.
Limits and potentials of quantum chemical methods in modelling photosynthetic antennae
.
Phys. Chem. Chem. Phys.. :-.
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Morreale, A
,
de la Cruz X
,
Meyer T
,
Gelpi JL
,
Luque FJ
,
Orozco M
. 2004.
Linear response theory: an alternative to PB and GB methods for the analysis of molecular dynamics trajectories?
Proteins. 57(3):458-467.
Abstract
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Huertas, O
,
Poater J
,
Fuentes-Cabrera M
,
Orozco M
,
Sola M
,
Luque FJ
. 2006.
Local aromaticity in natural nucleobases and their size-expanded benzo-fused derivatives
.
The journal of physical chemistry.A. 110(44):12249-12258.
Abstract
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Schmidtke, P
,
Bidon-Chanal A
,
Luque FJ
,
Barril X
. 2011.
MDpocket : Open Source Cavity Detection and Characterization on Molecular Dynamics Trajectories
.
Bioinformatics (Oxford, England).
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Estelrich, J
,
Pouplana R
. 1987.
Measurement of a glycoprotein with blood group A activity by light scattering
.
Journal of Biochemical and Biophysical Methods. 14(3):119-126.
Abstract
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Kim, J
,
Huxter VM
,
Curutchet C
,
Scholes GD
. 2009.
Measurement of Electron-Electron Interactions and Correlations Using Two-Dimensional Electronic Double-Quantum Coherence Spectroscopy
.
Journal of Physical Chemistry A. 113(44):12122-12133.
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Marti, MA
,
Bidon-Chanal A
,
Crespo A
,
Yeh SR
,
Guallar V
,
Luque FJ
,
Estrin DA
. 2008.
Mechanism of product release in NO detoxification from Mycobacterium tuberculosis truncated hemoglobin N
.
Journal of the American Chemical Society. 130(5):1688-1693.
Abstract
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Singh, S
,
Thakur N
,
Oliveira A
,
Petruk AA
,
Hade MD
,
Sethi D
,
Bidon-Chanal A
,
Marti MA
,
Datta H
,
Parkesh R
et al.
. 2014.
Mechanistic insight into the enzymatic reduction of truncated hemoglobin N of Mycobacterium tuberculosis: Role of the CD loop and Pre-A motif in electron cycling
.
Journal of Biological Chemistry. 289
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Perissinotti, LL
,
Marti MA
,
Doctorovich F
,
Luque FJ
,
Estrin DA
. 2008.
A microscopic study of the deoxyhemoglobin-catalyzed generation of nitric oxide from nitrite anion
.
Biochemistry. 47(37):9793-9802.
Abstract
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Hernandez, B
,
Soliva R
,
Luque FJ
,
Orozco M
. 2000.
Misincorporation of 2'-deoxyoxanosine into DNA: a molecular basis for NO-induced mutagenesis derived from theoretical calculations
.
Nucleic acids research. 28(24):4873-4883.
Abstract
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Hernandez, B
,
Luque FJ
,
Orozco M
. 2000.
Mixed QM/MM molecular electrostatic potentials
.
Journal of computer-aided molecular design. 14(4):329-339.
Abstract
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Campanera, JM
,
Pouplana R
. 2010.
MMPBSA decomposition of the binding energy throughout a molecular dynamics simulation of amyloid-beta (Abeta(10-35)) aggregation
.
Molecules (Basel, Switzerland). 15(4):2730-2748.
Abstract
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Martin-Santamaria, S
,
Munoz-Muriedas J
,
Luque FJ
,
Gago F
. 2004.
Modulation of binding strength in several classes of active site inhibitors of acetylcholinesterase studied by comparative binding energy analysis
.
Journal of medicinal chemistry. 47(18):4471-4482.
Abstract
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Viani, L
,
Corbella M
,
Curutchet C
,
O'Reilly EJ
,
Olaya-Castro A
,
Mennucci B
. 2014.
Molecular basis of the exciton-phonon interactions in the PE545 light-harvesting complex
.
Phys. Chem. Chem. Phys.. 16:16302-16311.
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Llabres, S
,
Garcia-Rafes S
,
Cristobal-Lecina E
,
Riera A
,
Borrell JI
,
Camarasa J
,
Pubill D
,
Luque FJ
,
Escubedo E
. 2014.
Molecular basis of the selective binding of MDMA enantiomers to the alpha4beta2 nicotinic receptor subtype: Synthesis, pharmacological evaluation and mechanistic studies
.
European Journal of Medicinal Chemistry. 81
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Fradera, X
,
Marquez M
,
Smith BD
,
Orozco M
,
Luque FJ
. 2003.
Molecular dynamics study of 2rotaxanes: influence of solvation and cation on co-conformation
.
The Journal of organic chemistry. 68(12):4663-4673.
Abstract
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Alhambra, C
,
Luque FJ
,
Portugal J
,
Orozco M
. 1995.
Molecular dynamics study of the binding of elsamicin A to DNA
.
European journal of biochemistry / FEBS. 230(2):555-566.
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van Gunsteren, WF
,
Luque FJ
,
Timms D
,
Torda AE
. 1994.
Molecular mechanics in biology: from structure to function, taking account of solvation
.
Annual Review of Biophysics and Biomolecular Structure. 23:847-863.
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Cardenas, C
,
Bidon-Chanal A
,
Conejeros P
,
Arenas G
,
Marshall S
,
Luque FJ
. 2010.
Molecular modeling of class I and II alleles of the major histocompatibility complex in Salmo salar
.
Journal of computer-aided molecular design. 24(12):1035-1051.
Abstract
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Barril, X
,
Soliva R
. 2006.
Molecular modelling
.
Molecular bioSystems. 2(12):660-681.
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Munoz-Muriedas, J
,
Lopez JM
,
Orozco M
,
Luque FJ
. 2004.
Molecular modelling approaches to the design of acetylcholinesterase inhibitors: new challenges for the treatment of Alzheimer's disease
.
Current pharmaceutical design. 10(25):3131-3140.
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Pouplana, R
,
Lozano JJ
,
Ruiz J
. 2002.
Molecular modelling of the differential interaction between several non-steroidal anti-inflammatory drugs and human prostaglandin endoperoxide H synthase-2 (h-PGHS-2)
.
Journal of molecular graphics & modelling. 20(4):329-343.
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