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Perez, A, Noy A, Lankas F, Luque FJ, Orozco M.  2004.  The relative flexibility of B-DNA and A-RNA duplexes: database analysis. Nucleic acids research. 32(20):6144-6151. Abstract
Oliveira, A, Singh S, Bidon-Chanal A, Forti F, Marti MA, Boechi L, Estrin DA, Dikshit KL, Luque FJ.  2012.  Role of PheE15 Gate in Ligand Entry and Nitric Oxide Detoxification Function of Mycobacterium tuberculosis Truncated Hemoglobin N. PLoS ONE. 7
Soliva, R, Luque FJ, Alhambra C, Orozco M.  1999.  Role of sugar re-puckering in the transition of A and B forms of DNA in solution. A molecular dynamics study. Journal of Biomolecular Structure & Dynamics. 17(1):89-99. Abstract
Hernandez, B, Orozco M, Luque FJ.  1997.  Role of tautomerism of 2-azaadenine and 2-azahypoxanthine in substrate recognition by xanthine oxidase. Journal of computer-aided molecular design. 11(2):153-162. Abstract
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Barril, X, Aleman C, Orozco M, Luque FJ.  1998.  Salt bridge interactions: stability of the ionic and neutral complexes in the gas phase, in solution, and in proteins. Proteins. 32(1):67-79. Abstract
Curutchet, C, Orozco M, Luque FJ.  2001.  Solvation in octanol: Parametrization of the continuum MST model. Journal of Computational Chemistry. 22(11):1180-1193. Abstract
Blas, JR, Huertas O, Tabares C, Sumpter BG, Fuentes-Cabrera M, Orozco M, Ordejon P, Luque FJ.  2011.  Structural, dynamical, and electronic transport properties of modified DNA duplexes containing size-expanded nucleobases. The journal of physical chemistry.A. 115(41):11344-11354. Abstract
Rueda, M, Kalko SG, Luque FJ, Orozco M.  2003.  The structure and dynamics of DNA in the gas phase. Journal of the American Chemical Society. 125(26):8007-8014. Abstract
Noy, A, Perez A, Marquez M, Luque FJ, Orozco M.  2005.  Structure, recognition properties, and flexibility of the DNA.RNA hybrid. Journal of the American Chemical Society. 127(13):4910-4920. Abstract
Soteras, I, Lozano O, Escolano C, Orozco M, Amat M, Bosch J, Luque FJ.  2008.  Structure-directed reversion in the pi-facial stereoselective alkylation of chiral bicyclic lactams. The Journal of organic chemistry. 73(19):7756-7763. Abstract
Marco, JL, de los Rios C, Garcia AG, Villarroya M, Carreiras MC, Martins C, Eleuterio A, Morreale A, Orozco M, Luque FJ.  2004.  Synthesis, biological evaluation and molecular modelling of diversely functionalized heterocyclic derivatives as inhibitors of acetylcholinesterase/butyrylcholinesterase and modulators of Ca2+ channels and nicotinic receptors. Bioorganic & medicinal chemistry. 12(9):2199-2218. Abstract
Camps, P, Gomez E, Munoz-Torrero D, Badia A, Vivas NM, Barril X, Orozco M, Luque FJ.  2001.  Synthesis, in vitro pharmacology, and molecular modeling of syn-huprines as acetylcholinesterase inhibitors. Journal of medicinal chemistry. 44(26):4733-4736. Abstract
Camps, P, Achab ER, Gorbig DM, Morral J, Munoz-Torrero D, Badia A, Banos EJ, Vivas NM, Barril X, Orozco M et al..  1999.  Synthesis, in vitro pharmacology, and molecular modeling of very potent tacrine-huperzine A hybrids as acetylcholinesterase inhibitors of potential interest for the treatment of Alzheimer's disease. Journal of medicinal chemistry. 42(17):3227-3242. Abstract
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Hernandez, B, Orozco M, Luque FJ.  1996.  Tautomerism of xanthine and alloxanthine: a model for substrate recognition by xanthine oxidase. Journal of computer-aided molecular design. 10(6):535-544. Abstract
Noy, A, Luque FJ, Orozco M.  2008.  Theoretical analysis of antisense duplexes: determinants of the RNase H susceptibility. Journal of the American Chemical Society. 130(11):3486-3496. Abstract
Rueda, M, Luque FJ, Orozco M.  2002.  A theoretical investigation on the effect of remote amino groups in hydrogen bonding of nucleic acids. Biopolymers. 61(1):52-60. Abstract
Orozco, M, Luque FJ.  2000.  Theoretical Methods for the Description of the Solvent Effect in Biomolecular Systems. Chemical reviews. 100(11):4187-4226.
Orozco, M, Luque FJ.  2001.  Theoretical methods for the description of the solvent effect in biomolecular systems. (Chem. Rev. 2000, 100, 4187-4226. Published on the web oct 21, 2000.). Chemical reviews. 101(1):203-204.
Orozco, M, Perez A, Noy A, Luque FJ.  2003.  Theoretical methods for the simulation of nucleic acids. Chemical Society Reviews. 32(6):350-364. Abstract
Cubero, E, Luque FJ, Orozco M.  2001.  Theoretical studies of d(A:T)-based parallel-stranded DNA duplexes. Journal of the American Chemical Society. 123(48):12018-12025. Abstract
Soliva, R, Almansa C, Kalko SG, Luque FJ, Orozco M.  2003.  Theoretical studies on the inhibition mechanism of cyclooxygenase-2. Is there a unique recognition site? Journal of medicinal chemistry. 46(8):1372-1382. Abstract
Cubero, E, Abrescia NG, Subirana JA, Luque FJ, Orozco M.  2003.  Theoretical study of a new DNA structure: the antiparallel Hoogsteen duplex. Journal of the American Chemical Society. 125(47):14603-14612. Abstract
Ribas, J, Cubero E, Luque FJ, Orozco M.  2002.  Theoretical study of alkyl-pi and aryl-pi interactions. Reconciling theory and experiment. The Journal of organic chemistry. 67(20):7057-7065. Abstract
Blas, JR, Marquez M, Sessler JL, Luque FJ, Orozco M.  2002.  Theoretical study of anion binding to calix[4]pyrrole: the effects of solvent, fluorine substitution, cosolute, and water traces. Journal of the American Chemical Society. 124(43):12796-12805. Abstract
Cubero, E, Luque FJ, Orozco M.  2006.  Theoretical study of the Hoogsteen-Watson-Crick junctions in DNA. Biophysical journal. 90(3):1000-1008. Abstract