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D
Curutchet, C
,
Mennucci B
,
Scholes GD
,
Beljonne D
. 2008.
Does forster theory predict the rate of electronic energy transfer for a model dyad at low temperature?
Journal of Physical Chemistry B. 112(12):3759-3766.
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E
Curutchet, C
,
Munoz-Losa A
,
Monti S
,
Kongsted J
,
Scholes GD
,
Mennucci B
. 2009.
Electronic Energy Transfer in Condensed Phase Studied by a Polarizable QM/MM Model
.
Journal of Chemical Theory and Computation. 5(7):1838-1848.
Abstract
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Curutchet, C
,
Novoderezhkin VI
,
Kongsted J
,
Munoz-Losa A
,
van Grondelle R
,
Scholes GD
,
Mennucci B
. 2013.
Energy Flow in the Cryptophyte PE545 Antenna Is Directed by Bilin Pigment Conformation
.
Journal of Physical Chemistry B. 117(16):4263-4273.
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Flores-Morales, P
,
Diema C
,
Vilaseca M
,
Estelrich J
,
Luque FJ
,
Gutierrez-Oliva S
,
Toro-Labbe A
,
Silva E
. 2011.
Enhanced reactivity of Lys182 explains the limited efficacy of biogenic amines in preventing the inactivation of glucose-6-phosphate dehydrogenase by methylglyoxal
.
Bioorganic & medicinal chemistry. 19(5):1613-1622.
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Curutchet, C
,
Franceschetti A
,
Zunger A
,
Scholes GD
. 2008.
Examining Forster energy transfer for semiconductor nanocrystalline quantum dot donors and acceptors
.
Journal of Physical Chemistry C. 112(35):13336-13341.
Abstract
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Novoderezhkin, VI
,
Doust AB
,
Curutchet C
,
Scholes GD
,
van Grondelle R
. 2010.
Excitation Dynamics in Phycoerythrin 545: Modeling of Steady-State Spectra and Transient Absorption with Modified Redfield Theory
.
Biophysical Journal. 99(2):344-352.
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Schmidtke, P
,
Alvarez-garcia D
,
Seco J
,
Barril X
. 2012.
Expanding the Target Space : Druggability Assessments
.
44:302-318.
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Blas, JR
,
Lopez-Bes JM
,
Marquez M
,
Sessler JL
,
Luque FJ
,
Orozco M
. 2007.
Exploring the dynamics of calix[4]pyrrole: effect of solvent and fluorine substitution
.
Chemistry (Weinheim an der Bergstrasse, Germany). 13(4):1108-1116.
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Juarez-Jimenez, J
,
Mendes E
,
Galdeano C
,
Martins C
,
Silva DB
,
Marco-Contelles J
,
Carreiras MC
,
Luque FJ
,
Ramsay RR
. 2014.
Exploring the structural basis of the selective inhibition of monoamine oxidase A by dicarbonitrile aminoheterocycles: Role of Asn181 and Ile335 validated by spectroscopic and computational studies
.
Biochimica Biophysica Acta – Proteins Proteinomics. 1844
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Soteras, I
,
Curutchet C
,
Bidon-Chanal A
,
Orozco M
,
Luque FJ
. 2005.
Extension of the MST model to the IEF formalism: HF and B3LYP parametrizations
.
Journal of Molecular Structure-Theochem. 727(1-3):29-40.
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F
Salichs, A
,
Lopez M
,
Segarra V
,
Orozco M
,
Luque FJ
. 2002.
Fast estimation of hydrogen-bonding donor and acceptor propensities: a GMIPp study
.
Journal of computer-aided molecular design. 16(8-9):569-583.
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Talavera, D
,
Morreale A
,
Meyer T
,
Hospital A
,
Ferrer-Costa C
,
Gelpi JL
,
de la Cruz X
,
Soliva R
,
Luque FJ
,
Orozco M
. 2006.
A fast method for the determination of fractional contributions to solvation in proteins
.
Protein science : a publication of the Protein Society. 15(11):2525-2533.
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Howes, R
,
Barril X
,
Dymock BW
,
Grant K
,
Northfield CJ
,
Robertson AG
,
Surgenor A
,
Wayne J
,
Wright L
,
James K
et al.
. 2006.
A fluorescence polarization assay for inhibitors of Hsp90
.
Analytical Biochemistry. 350(2):202-213.
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Guilloux, LV
,
Schmidtke P
,
Tuffery P
. 2009.
Fpocket: an open source platform for ligand pocket detection
.
BMC bioinformatics. 10:168-168.
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Schmidtke, P
,
Guilloux LV
,
Maupetit J
,
Tuffery P
. 2010.
Fpocket: Online Tools for Protein Ensemble Pocket Detection and Tracking
.
Nucleic acids research.
Abstract
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G
Svozil, D
,
Sponer JE
,
Marchan I
,
Perez A
,
3rd CTE
,
Forti F
,
Luque FJ
,
Orozco M
,
Sponer J
. 2008.
Geometrical and electronic structure variability of the sugar-phosphate backbone in nucleic acids
.
The journal of physical chemistry.B. 112(27):8188-8197.
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H
Spyrakis, F
,
Faggiano S
,
Abbruzzetti S
,
Dominici P
,
Cacciatori E
,
Astegno A
,
Droghetti E
,
Feis A
,
Smulevich G
,
Bruno S
et al.
. 2011.
Histidine E7 dynamics modulates ligand exchange between distal pocket and solvent in AHb1 from Arabidopsis thaliana
.
The journal of physical chemistry.B. 115(14):4138-4146.
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Scholes, GD
,
Curutchet C
,
Mennucci B
,
Cammi R
,
Tomasi J
. 2007.
How solvent controls electronic energy transfer and light harvesting
.
Journal of Physical Chemistry B. 111(25):6978-6982.
Abstract
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Curutchet, C
,
Scholes GD
,
Mennucci B
,
Cammi R
. 2007.
How solvent controls electronic energy transfer and light harvesting: Toward a quantum-mechanical description of reaction field and screening effects
.
Journal of Physical Chemistry B. 111(46):13253-13265.
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Galdeano, C
,
Viayna E
,
Sola I
,
Formosa X
,
Camps P
,
Badia A
,
Clos MV
,
Relat J
,
Ratia M
,
Bartolini M
et al.
. 2012.
Huprine–Tacrine Heterodimers as Anti-Amyloidogenic Compounds of Potential Interest against Alzheimer’s and Prion Diseases
.
J. Med. Chem. . 55
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I
Wong, CY
,
Curutchet C
,
Tretiak S
,
Scholes GD
. 2009.
Ideal dipole approximation fails to predict electronic coupling and energy transfer between semiconducting single-wall carbon nanotubes
.
Journal of Chemical Physics. 130(8)
Abstract
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Noy, A
,
Soteras I
,
Luque FJ
,
Orozco M
. 2009.
The impact of monovalent ion force field model in nucleic acids simulations
.
Physical chemistry chemical physics : PCCP. 11(45):10596-10607.
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Soteras, I
,
Orozco M
,
Luque FJ
. 2008.
Induction effects in metal cation-benzene complexes
.
Physical chemistry chemical physics : PCCP. 10(19):2616-2624.
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Sharp, SY
,
Prodromou C
,
Boxall K
,
Powers MV
,
Holmes JL
,
Box G
,
Matthews TP
,
Cheung KM
,
Kalusa A
,
James K
et al.
. 2007.
Inhibition of the heat shock protein 90 molecular chaperone in vitro and in vivo by novel, synthetic, potent resorcinylic pyrazole/isoxazole amide analogues
.
Molecular cancer therapeutics. 6(4):1198-1211.
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L
Schmidtke, P
,
Souaille C
,
Estienne F
,
Baurin N
,
Kroemer RT
. 2010.
Large-Scale Comparison of Four Binding Site Detection Algorithms
.
Journal of Chemical Information and Modeling.
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