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Rueda, M
,
Kalko SG
,
Luque FJ
,
Orozco M
. 2003.
The structure and dynamics of DNA in the gas phase
.
Journal of the American Chemical Society. 125(26):8007-8014.
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Rueda, M
,
Luque FJ
,
Orozco M
. 2006.
G-quadruplexes can maintain their structure in the gas phase
.
Journal of the American Chemical Society. 128(11):3608-3619.
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Rueda, M
,
Luque FJ
,
Orozco M
. 2005.
Nature of minor-groove binders-DNA complexes in the gas phase
.
Journal of the American Chemical Society. 127(33):11690-11698.
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Rueda, M
,
Luque FJ
,
Orozco M
. 2002.
A theoretical investigation on the effect of remote amino groups in hydrogen bonding of nucleic acids
.
Biopolymers. 61(1):52-60.
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S
Salichs, A
,
Lopez M
,
Segarra V
,
Orozco M
,
Luque FJ
. 2002.
Fast estimation of hydrogen-bonding donor and acceptor propensities: a GMIPp study
.
Journal of computer-aided molecular design. 16(8-9):569-583.
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Soliva, R
,
Garcia GR
,
Blas JR
,
Eritja R
,
Asensio JL
,
Gonzalez C
,
Luque FJ
,
Orozco M
. 2000.
DNA-triplex stabilizing properties of 8-aminoguanine
.
Nucleic acids research. 28(22):4531-4539.
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Soliva, R
,
Almansa C
,
Kalko SG
,
Luque FJ
,
Orozco M
. 2003.
Theoretical studies on the inhibition mechanism of cyclooxygenase-2. Is there a unique recognition site?
Journal of medicinal chemistry. 46(8):1372-1382.
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Soliva, R
,
Luque FJ
,
Alhambra C
,
Orozco M
. 1999.
Role of sugar re-puckering in the transition of A and B forms of DNA in solution. A molecular dynamics study
.
Journal of Biomolecular Structure & Dynamics. 17(1):89-99.
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Soliva, R
,
Luque FJ
,
Orozco M
. 1999.
Can G-C Hoogsteen-wobble pairs contribute to the stability of d(G. C-C) triplexes?
Nucleic acids research. 27(11):2248-2255.
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Soteras, I
,
Curutchet C
,
Bidon-Chanal A
,
Orozco M
,
Luque FJ
. 2005.
Extension of the MST model to the IEF formalism: HF and B3LYP parametrizations
.
Journal of Molecular Structure-Theochem. 727(1-3):29-40.
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Soteras, I
,
Orozco M
,
Luque FJ
. 2008.
Induction effects in metal cation-benzene complexes
.
Physical chemistry chemical physics : PCCP. 10(19):2616-2624.
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Soteras, I
,
Orozco M
,
Luque FJ
. 2010.
Performance of the IEF-MST solvation continuum model in the SAMPL2 blind test prediction of hydration and tautomerization free energies
.
Journal of computer-aided molecular design. 24(4):281-291.
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Soteras, I
,
Lozano O
,
Gomez-Esque A
,
Escolano C
,
Orozco M
,
Amat M
,
Bosch J
,
Luque FJ
. 2006.
On the origin of the stereoselectivity in the alkylation of oxazolopiperidone enolates
.
Journal of the American Chemical Society. 128(20):6581-6588.
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Soteras, I
,
Lozano O
,
Escolano C
,
Orozco M
,
Amat M
,
Bosch J
,
Luque FJ
. 2008.
Structure-directed reversion in the pi-facial stereoselective alkylation of chiral bicyclic lactams
.
The Journal of organic chemistry. 73(19):7756-7763.
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Soteras, I
,
Forti F
,
Orozco M
,
Luque FJ
. 2009.
Performance of the IEF-MST solvation continuum model in a blind test prediction of hydration free energies
.
The journal of physical chemistry.B. 113(27):9330-9334.
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Sponer, J
,
Jurecka P
,
Marchan I
,
Luque FJ
,
Orozco M
,
Hobza P
. 2006.
Nature of base stacking: reference quantum-chemical stacking energies in ten unique B-DNA base-pair steps
.
Chemistry (Weinheim an der Bergstrasse, Germany). 12(10):2854-2865.
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Svozil, D
,
Sponer JE
,
Marchan I
,
Perez A
,
3rd CTE
,
Forti F
,
Luque FJ
,
Orozco M
,
Sponer J
. 2008.
Geometrical and electronic structure variability of the sugar-phosphate backbone in nucleic acids
.
The journal of physical chemistry.B. 112(27):8188-8197.
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T
Talavera, D
,
Morreale A
,
Meyer T
,
Hospital A
,
Ferrer-Costa C
,
Gelpi JL
,
de la Cruz X
,
Soliva R
,
Luque FJ
,
Orozco M
. 2006.
A fast method for the determination of fractional contributions to solvation in proteins
.
Protein science : a publication of the Protein Society. 15(11):2525-2533.
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V
Vazquez-Mayagoita, A
,
Huertas O
,
Fuentes-Cabrera M
,
Sumpter BG
,
Orozco M
,
Luque FJ
. 2008.
Ab initio study of naphtho-homologated DNA bases
.
The journal of physical chemistry.B. 112(7):2179-2186.
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Vazquez-Mayagoitia, A
,
Huertas O
,
Brancolini G
,
Migliore A
,
Sumpter BG
,
Orozco M
,
Luque FJ
,
Felice DR
,
Fuentes-Cabrera M
. 2009.
Ab initio study of the structural, tautomeric, pairing, and electronic properties of seleno-derivatives of thymine
.
The journal of physical chemistry.B. 113(43):14465-14472.
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