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M
Martinez, A
,
Alonso M
,
Castro A
,
Dorronsoro I
,
Gelpi JL
,
Luque FJ
,
Perez C
,
Moreno FJ
. 2005.
SAR and 3D-QSAR studies on thiadiazolidinone derivatives: exploration of structural requirements for glycogen synthase kinase 3 inhibitors
.
Journal of medicinal chemistry. 48(23):7103-7112.
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Morreale, A
,
de la Cruz X
,
Meyer T
,
Gelpi JL
,
Luque FJ
,
Orozco M
. 2005.
Partition of protein solvation into group contributions from molecular dynamics simulations
.
Proteins. 58(1):101-109.
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Morreale, A
,
de la Cruz X
,
Meyer T
,
Gelpi JL
,
Luque FJ
,
Orozco M
. 2004.
Linear response theory: an alternative to PB and GB methods for the analysis of molecular dynamics trajectories?
Proteins. 57(3):458-467.
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Morreale, A
,
Gelpi JL
,
Luque FJ
,
Orozco M
. 2003.
Continuum and discrete calculation of fractional contributions to solvation free energy
.
Journal of computational chemistry. 24(13):1610-1623.
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Munoz, J
,
Barril X
,
Hernandez B
,
Orozco M
,
Luque FJ
. 2002.
Hydrophobic similarity between molecules: a MST-based hydrophobic similarity index
.
Journal of computational chemistry. 23(5):554-563.
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Munoz-Muriedas, J
,
Barril X
,
Lopez JM
,
Orozco M
,
Luque FJ
. 2007.
A hydrophobic similarity analysis of solvation effects on nucleic acid bases
.
Journal of molecular modeling. 13(2):357-365.
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Munoz-Muriedas, J
,
Lopez JM
,
Orozco M
,
Luque FJ
. 2004.
Molecular modelling approaches to the design of acetylcholinesterase inhibitors: new challenges for the treatment of Alzheimer's disease
.
Current pharmaceutical design. 10(25):3131-3140.
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Munoz-Muriedas, J
,
Perspicace S
,
Bech N
,
Guccione S
,
Orozco M
,
Luque FJ
. 2005.
Hydrophobic molecular similarity from MST fractional contributions to the octanol/water partition coefficient
.
Journal of computer-aided molecular design. 19(6):401-419.
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Munoz-Ruiz, P
,
Rubio L
,
Garcia-Palomero E
,
Dorronsoro I
,
del Monte-Millan M
,
Valenzuela R
,
Usan P
,
de Austria C
,
Bartolini M
,
Andrisano V
et al.
. 2005.
Design, synthesis, and biological evaluation of dual binding site acetylcholinesterase inhibitors: new disease-modifying agents for Alzheimer's disease
.
Journal of medicinal chemistry. 48(23):7223-7233.
Abstract
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N
Noy, A
,
Luque FJ
,
Orozco M
. 2008.
Theoretical analysis of antisense duplexes: determinants of the RNase H susceptibility
.
Journal of the American Chemical Society. 130(11):3486-3496.
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Noy, A
,
Meyer T
,
Rueda M
,
Ferrer C
,
Valencia A
,
Perez A
,
de la Cruz X
,
Lopez-Bes JM
,
Pouplana R
,
Fernandez-Recio J
et al.
. 2006.
Data mining of molecular dynamics trajectories of nucleic acids
.
Journal of Biomolecular Structure & Dynamics. 23(4):447-456.
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Noy, A
,
Perez A
,
Marquez M
,
Luque FJ
,
Orozco M
. 2005.
Structure, recognition properties, and flexibility of the DNA.RNA hybrid
.
Journal of the American Chemical Society. 127(13):4910-4920.
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Noy, A
,
Soteras I
,
Luque FJ
,
Orozco M
. 2009.
The impact of monovalent ion force field model in nucleic acids simulations
.
Physical chemistry chemical physics : PCCP. 11(45):10596-10607.
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O
Oliveira, A
,
Singh S
,
Bidon-Chanal A
,
Forti F
,
Marti MA
,
Boechi L
,
Estrin DA
,
Dikshit KL
,
Luque FJ
. 2012.
Role of PheE15 Gate in Ligand Entry and Nitric Oxide Detoxification Function of Mycobacterium tuberculosis Truncated Hemoglobin N
.
PLoS ONE. 7
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Oliveira, A
,
Allegri A
,
Bidon-Chanal A
,
Knipp M
,
Roitberg A
,
Abbruzzetti S
,
Viappiani C
,
Luque FJ
. 2013.
Kinetics and computational studies of ligand migration in nitrophorin 7 and its Delta1-3 mutant
.
Biochimica Biophysica Acta – Proteins Proteinomics. 1834:1711-1721.
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Orozco, M
,
Luque FJ
. 2001.
Theoretical methods for the description of the solvent effect in biomolecular systems. (Chem. Rev. 2000, 100, 4187-4226. Published on the web oct 21, 2000.)
.
Chemical reviews. 101(1):203-204.
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Orozco, M
,
Luque FJ
. 2000.
Theoretical Methods for the Description of the Solvent Effect in Biomolecular Systems
.
Chemical reviews. 100(11):4187-4226.
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Orozco, M
,
Luque FJ
. 1997.
Computer-assisted drug design: current status and future trends
.
Methods and findings in experimental and clinical pharmacology. 19 Suppl A:33-35.
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Orozco, M
,
Luque FJ
. 1990.
A practical procedure for the determination of electrostatic charges of large molecules
.
Journal of computer-aided molecular design. 4(4):411-426.
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Orozco, M
,
Luque FJ
. 1989.
POEAMS: program for outliers elimination in 'anomalous' multidimensional space
.
Computer applications in the biosciences : CABIOS. 5(3):241-242.
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Orozco, M
,
Luque FJ
. 1988.
POEMS: program for outliers elimination in multidimensional space
.
Computer applications in the biosciences : CABIOS. 4(3):381-385.
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Orozco, M
,
Perez A
,
Noy A
,
Luque FJ
. 2003.
Theoretical methods for the simulation of nucleic acids
.
Chemical Society Reviews. 32(6):350-364.
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P
Perez, A
,
Lankas F
,
Luque FJ
,
Orozco M
. 2008.
Towards a molecular dynamics consensus view of B-DNA flexibility
.
Nucleic acids research. 36(7):2379-2394.
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Perez, A
,
Luque FJ
,
Orozco M
. 2007.
Dynamics of B-DNA on the microsecond time scale
.
Journal of the American Chemical Society. 129(47):14739-14745.
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Perez, A
,
Noy A
,
Lankas F
,
Luque FJ
,
Orozco M
. 2004.
The relative flexibility of B-DNA and A-RNA duplexes: database analysis
.
Nucleic acids research. 32(20):6144-6151.
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