Ligand-induced changes in the binding sites of proteins

TitleLigand-induced changes in the binding sites of proteins
Publication TypeJournal Article
Year of Publication2002
AuthorsFradera, X, Cruz D LX, Silva CH, Gelpi JL, Luque FJ, Orozco M
JournalBioinformatics (Oxford, England)
Pagination939 - 948
Date Published2002/07//
KeywordsAmino Acid Sequence; Binding Sites/genetics; Cluster Analysis; Databases, Molecular; Models, Nonparametric; Structure-Activity Relationship, Protein/methods; Statistics, Protein; Ligands; Macromolecular Substances; Models, Statistical; Molecular Sequence Data; Protein Binding/genetics; Protein Conformation; Proteins/chemistry/genetics/metabolism; Reproducibility of Results; Sensitivity and Specificity; Sequence Analysis
AbstractClassical molecular interaction potentials, in conjunction with other theoretical techniques, are used to analyze the dependence of the binding sites of representative proteins on the bound ligand. It is found that the ligand bound introduces in general small structural perturbations at the binding site of the protein. However, such small structural changes can lead to important alterations in the recognition pattern of the protein. The impact of these findings in docking procedures is discussed.