Genetics of Development and Regeneration

Florenci Serras


Genetics of Development and Regeneration

A key issue in development is the coordination between proliferation, differentiation and organization of cells into functional tissues. Similarly, in tissue regeneration, cells proliferate, differentiate and organize themselves to reconstruct the missing parts. One of the most intriguing questions in current biology is to discover the genetic programs required to reconstruct damaged tissues and to unveil the differences and similarities between regeneration and development. The ultimate goal of our lab is to identify regeneration-enabling programs and reveal the mechanisms of their action. We employ Drosophila imaginal discs, which are epithelial tissues amenable to genetic analysis, in which we apply genetic and surgical techniques to disrupt epithelia and monitor repair and regeneration. The design of engineered genetic tools in imaginal tissues has been fundamental to understand some of the basic principles that govern epithelial regeneration.

Genetically engineered tools for studying regeneration in Drosophila

We genetically activate cell death to induce regeneration (Bergantiños et al 2010 and Smith-Bolton et al., 2009). The technique is based on the activation of apoptosis in specific zones using tissue specific transactivation drivers controlled by temperature sensitive alleles.



Double transactivator based cell death induced regeneration

This is an alternative technique that allows two cell populations in the same imaginal disc to be genetically programmed to express different transgenes (Santabárbara-Ruiz et al., 2015). One transactivator can drive the pro-apoptotic gene (e.g. rpr or hid) whereas the other can express a tester transgene (e.g. a UAS-RNAi for a gene of interest). Using this strategy, the combination of lexA and Gal4 double transactivator system has been key for our regeneration studies. LexA is a bacterial transcription factor that binds to specific sequences known as the LexA operator or lexO. An optimized LexA transactivation system has been engineered to work together with Gal4. Briefly, chimeric proteins have been created in which LexA (L) contains the activation domain of yeast Gal4 (G) separated by a hinge region (H), which results in a Gal80TS suppressible LHG (Yagi, Mayer, and Basler 2010).

Activated LHG induces the expression of any transgene under the control of the lexO sequences and does not interfere with Gal4/UAS. For combined transactivation systems, the LHG/lexO-rpr is used to induce cell death in specific domains of the imaginal disc, and the Gal4/UAS system to activate the desired UAS-transgene (UAS-RNAi, UAS-mutated forms, etc), both controlled by the temperature sensitive allele Gal80TS. This combined system has allowed to monitor gene function in regeneration. We aim to improve these genetic designs for ex vivo imaging.

Physical damage for regeneration studies

Another method is to inflict a physical injury in discs and analyze the response to damage after implantation in the female abdomen, which acts as a culture chamber.

Alternatively, discs can be cultured ex vivo after physical injury and imaged. The use of fluorescent reporters helps to observe gene activity in living tissues.

An important issue in regeneration research is to discover the early signals that trigger regeneration. Physical damage or induction of cell death result in a burst of reactive oxygen species (ROS) that spreads to neighboring healthy tissue. This event induces activation of the p38 and JNK stress activated protein kinases.

Downstream of these MAPKs, the leptin-like cytokines Unpaired (homologous to the human IL-6) are transcriptionally activated. These bind to the IL-6R type receptor that activates a Janus kinase, and thereby promotes the translocation of a STAT3-like transcription factor STAT92E to the nucleus.

We are currently analyzing how these stress responses are sensed into the cells near a damaged zone in order to be recruited to start healing and regeneration.

To regenerate a missing structure, epithelial cells must be able to re-specify their fates to reconstruct the missing tissue. Thus, our goal is to understand how cells can switch from one genetic program to another. To this aim, we investigate the genetic and epigenetic basis of cell fate re-specification during regeneration.

During normal growth, cells divisions are oriented to coordinate tissue size and shape. In addition to proliferation and re-specification, epithelial regenerating cells replace the missing tissue by activating proliferation and reorienting cell divisions to repopulate the missing zones.

A single cell resolution model to examine the relationship between cell signaling and cell-fate specification is the R7 photoreceptor in the Drosophila retina. The activation of the Sevenless receptor tyrosine kinase, which upon activation signals through Ras/MAPK to the nucleous, plays a pivotal role in the specification of the R7 cell. Although that pathway has been well characterized, its regulators and links to other signaling pathways are poorly known. Genetic screenings and transcriptome analysis have been used in the lab to discover the genes that respond to different levels of signaling activity.