Lázaro, EM; Harrath, AH; Stocchino, GA; Pala, M; Baguñà, J; Riutort, M. (2011) Schmidtea mediterranea phylogeography: an old species surviving on a few Mediterranean islands? BMC Evolutionary Biology, 11: 274

Paps, J.; Riutort, M. Molecular Phylogeny of The Phylum Gastrotricha: New Data Brings Together Molecules and Morphology. Molecular Phylogenetics and Evolution (in press)

Riutort, M.; Lázaro, E.M.; Álvarez-Presas, M.; Solà, E.; Paps, J. Evolutionary history of the Tricladida and the Platyhelminthes: an up-to-date phylogenetic and systematic account. International Journal of Developmental Biology. Review (in press)

Marta Álvarez-Presas, Fernando Carbayo, Julio Rozas & Marta Riutort (2011) Land planarians (Platyhelminthes) as a model organism for fine-scale phylogeographic studies: understanding patterns of biodiversity in the Brazilian Atlantic Forest hotspot. Journal of Evolutionary Biology (in press)

Paps, J.; Baguñà, J.; Riutort, M. (2009) Bilaterian Phylogeny: A Broad Sampling of 13 Nuclear Genes Provides a New Lophotrochozoa Phylogeny and Supports a Paraphyletic Basal Acoelomorpha. Molecular Biology and Evolution 26 (10): 2397-2406.

Mateos, E.; Cabrera, C.; Carranza, S.; Riutort, M. (2009) Molecular analysis of the diversity of terrestrial planarians (Platyhelminthes, Tricladida, Continenticola) in the Iberian Peninsula. Zoologica Scripta 38 (6): 637-649   

Lázaro, E.; Sluys, R.; Pala, M.; Stocchino, G.A.; Baguñà, J.; Riutort, M. (2009) Molecular barcoding and phylogeography of sexual and asexual freshwater planarians of the genus Dugesia in the Western Mediterranean (Platyhelminthes, Tricladida, Dugesiidae). Molecular Phylogenetics and Evolution 52: 835-845.  

Jordi Paps, Jaume Bagunà and Marta Riutort (2009) Lophotrochozoa internal phylogeny: new insights from an up-to-date analysis of nuclear ribosomal genes Proc. R. Soc. B 276, 1245-1254

Marta álvarez-Presas, Jaume Baguñà, Marta Riutort (2008) Molecular phylogeny of land and freshwater planarians (Tricladida, Platyhelminthes): from freshwater to land and back. Molecular Phylogenetics and Evolution, 47 555-568.

Baguña, J.; Martinez, P.; Paps, J.; Riutort, M. (2008) Back in time: a new systematic proposal for the Bilateria. Philosophical Transactions of the Royal Society of London Series B-Biological Sciences 363: 1481-1491,  

Herve Philippe, Henner Brinkmann, Pedro Martinez, Marta Riutort, Jaume Baguñà (2007) Acoel Flatworms Are Not Platyhelminthes: Evidence from Phylogenomics. Plos One 2 (8): e717

Jaume Baguñà and Marta Riutort. (2004) The dawn of bilaterian animals: the case of acoelomorph flatworms. BioEssays 26: 1046-1057. Review

Baguñà J., Riutort M. (2004) Molecular phylogeny of Platyhelminthes. Canadian Journal of Zoology 82: 168-193. Review

Ruiz-Trillo I., Paps J., Loukota M., Ribera C., Jondelius U., Baguñà J., Riutort M. (2002) A phylogenetic analysis of myosin heavy chain type II sequences corroborates that Acoela and Nemertodermatida are basal bilaterians. PNAS 99(17): 11246-11251

Ruiz-Trillo I., Riutort M., Littlewood D.T.J., Herniou E.A., Baguñà J. (1999) Acoel flatworms: earliest extant bilaterian metazoans, not members of Platyhelminthes. Science 283: 1919-1923