2009
AGUADÉ, M.
  Nucleotide and copy-number polymorphism at the odorant receptor genes Or22a and Or22b in Drosophila melanogaster.
  Mol Biol Evol 26(1):61-70 (2009)
   
ALVAREZ-PONCE, D., AGUADÉ, M. & ROZAS, J.
  Network-level molecular evolutionary analysis of the insulin/TOR signal transduction pathway across 12 Drosophila genomes
  Genome Research 19(2):234-42 (2009)
   
CARBAYO, F., ALVAREZ-PRESAS, M., ROZAS, J. & RIUTORT, M.
  Planárias terrestres na Mata Atlântica: Filogeografia e implicações para a gestão do corredor da Serra do Mar.
  Ciência Hoje (in press).
   
GUIRAO-RICO, S. & AGUADÉ, M.
  Positive selection has driven the evolution of the Drosophila Insulin-like Receptor (InR) at different time scales.
  Mol Biol Evol 26(8):1723-32 (2009)
   
LIBRADO, P. & ROZAS, J.
  DnaSP v5: A software for comprehensive analysis of DNA poly-morphism data.
  Bioinformatics 25(11):1451-2 (2009)
   
ROZAS, J.
  DNA Sequence Polymorphism Analysis Using DnaSP.
 

Pp. 337-350 in Posada, D. (ed.) Bioinformatics for DNA Sequence Analysis; Methods. In Molecular Biology Series Vol. 537. Humana Press, NJ, USA (2009)
   
ROZAS, J.
  Análisis de la variabilidad genética y filogenias intraespecíficas.
  In Vargas, P. and Zardoya, R. (eds.) El árbol de la vida: sistemática y evolución. Editorial Reverté. (in press).
   
SÁNCHEZ-GRACIA, A., VIEIRA, F.G. & ROZAS, J.
  Molecular evolution of the major chemosensory gene families in insects.
  Heredity. 2009 May 13. [Epub ahead of print]
   
ZHOU, J.-J., VIEIRA, F. G., HE, X.-L., SMADJA, C., LIU, R., ROZAS, J. & FIELD, L. M.
  Genome annotation and comparative analyses of the odorant-binding proteins and chemosensory proteins in the pea aphid Acyrthosiphon pisum.
  Insect Mol. Biol. (in press).
   
2008
ANDRÉS, O., KELLERMANN, T., LÓPEZ-GIRÁLDEZ, F., ROZAS, J., DOMINGO-ROURA, X. & BOSCH, M.
  RPS4Y gene family evolution in primates.
  BMC Evol Biol 8:142 (2008)
   
CONCEIÇÃO, I.C. & AGUADÉ, M.
  High incidence of interchromosomal transpositions in the evolutionary history of a subset of or genes in Drosophila.
  J Mol Evol. 66(4):325-332 (2008)
   
NÓBREGA, C., KHADEM, M., AGUADÉ, M. & SEGARRA, C.
  Genetic exchange versus genetic differentiation in a medium-sized inversion of Drosophila: the A2/Ast arrangements of Drosophila subobscura.
  Mol Biol Evol 25(8):1534-1543 (2008)
   
RAMIREZ, A., RAMOS-ONSINS, S. E., ROZAS, J., CALAFELL, F. & NAVARRO, A.
  Statistical Power Analysis of Neutrality Tests Under Demographic Expansions, Contractions and Bottlenecks With Recombination.
  Genetics 179:555-567
   
RAMOS-ONSINS, S. E., PUERMA, E., BALAÑÁ-ALCAIDE, D., SALGUERO & D., AGUADÉ, M.
  Multilocus analysis of variation using a large empirical data set: phenylpropanoid pathway genes in Arabidopsis thaliana.
  Mol Ecol. 17(5):1211-1223 (2008)
   
SANCHEZ-GRACIA, A. & ROZAS, J.
  Divergent Evolution and Molecular Adaptation in the Drosophila Odorant-Binding Protein Family: Inferences from Sequence Variation at the OS-E and OS-F genes
  BMC Evol. Biol. 8:323 (2008)
   
SCHAEFFER SW et al.
  Polytene chromosomal maps of 11 Drosophila species: the order of genomic scaffolds inferred from genetic and physical maps.
  Genetics 179(3):1601-1655 (2008)
   
2007
CLARK, A. G. et al.
  Evolution of genes and genomes on the Drosophila phylogeny.
  Nature 450: 203-218 (2007)
   
ORENGO, D.J. & AGUADÉ, M.
  Genome scans of variation and adaptive change: extended analysis of a candidate locus close to the phantom gene region in Drosophila melanogaster.
  Mol Biol Evol. 24: 1122-1129 (2007)
   
PAPACEIT, M., AVILA, V., AGUADÉ, M. & GARCÍA-DORADO, A.
  The dynamics of the roo transposable element in mutation-accumulation lines and segregating populations of Drosophila melanogaster.
  Genetics 177: 511-22 (2007)
   
SANCHEZ-GRACIA, A. & ROZAS, J.
  Unusual pattern of nucleotide sequence variation at the OS-E and OS-F genomic regions of Drosophila simulans.
  Genetics 175: 1923-1935 (2007)
   
VIEIRA, F. G., SANCHEZ-GRACIA, A. & ROZAS, J.
  Comparative genomic analysis of the Odorant-Binding Protein family in 12 Drosophila genomes: Purifying selection and birth-and-death evolution.
  Genome Biol. 8: R235 (2007)
   
2006
BALAÑÁ-ALCAIDE, D., RAMOS-ONSINS, S. E., BOONE, Q. & AGUADÉ, M.
  Highly structured nucleotide variation within and among Arabidopsis lyrata populations at the FAH1 and DFR gene regions
  Mol Ecol. 15: 2059-2068 (2006)
   
HUTTER, S., VILELLA, A. J. & ROZAS, J.
  Genome-Wide DNA Polymorphism Analyses using VariScan.
  BMC Bioinformatics 7: 409 (2006)
   
PAPACEIT, M., AGUADÉ, M. & SEGARRA, C.
  Chromosomal evolution of elements B and C in the Sophophora subgenus of Drosophila: evolutionary rate and polymorphism
  Evolution Int J Org Evolution 60: 768-81 (2006)
   
QUESADA, H., RAMOS-ONSINS, S. E., ROZAS, J. & AGUADÉ, M.
  Positive Selection Versus Demography: Evolutionary Inferences Based on an Unusual Haplotype Structure in Drosophila simulans.
  Mol. Bio. Evol. 23: 1643-1647 (2006)
   
OJEDA, A., ROZAS, J., FOLCH, J. M. & PEREZ-ENCISO, M.
  Unexpected high polymorphism at FABP4 gene unveils a complex history for pig populations.
  Genetics 174: 2119-2127 (2006)
   
2005
BRAVERMAN, J., LAZZARO, B., AGUADÉ, M. & LANGLEY, C. H.
  DNA Sequence Polymorphism and Divergence at the erect wing and suppressor of sable loci of Drosophila melanogaster and D. simulans
  Genetics 170: 1153-1165 (2005).
   
MUNTÉ, A., ROZAS, J., AGUADÉ, M. & SEGARRA, C.
  Chromosomal inversion polymorphism leads to extensive genetic structure: a multilocus survey in Drosophila subobscura.
  Genetics 169: 1573-1581 (2005).
   
QUESADA, H., RAMOS-ONSINS, S. E. & AGUADÉ, M.
  Birth-and-death evolution of the Cecropin multigene family in Drosophila
  J. Mol. Evol. 60: 1-11 (2005).
   
VILELLA, A. J., BLANCO-GARCÍA, A., HUTTER, S. & ROZAS, J.
  VariScan: Analysis of evolutionary patterns from large-scale DNA sequence polymorphism data.
  Bioinformatics 21: 2791-2793 (2005).
   
2004
AGUADÉ, M., ROZAS, J. & SEGARRA, C.
  Inferring the action of natural selection from DNA sequence comparisons: data from Drosophila
  Pp. 11-19 in Moya, A. and Font, E. (eds.) Evolution: from Molecules to Ecosystems. Oxford Univ. Press. (2004).
   
ORENGO, D. J. & AGUADÉ, M.
  Detecting the Footprint of Positive Selection in a European Population of Drosophila melanogaster: Multilocus Pattern of Variation and Distance to Coding Regions
  Genetics 167: 1759-1766 (2004).
   
PICCINALI, R., AGUADÉ, M.& HASSON, E.
  Comparative Molecular Population Genetics of the Xdh Locus in the Cactophilic Sibling Species Drosophila buzzatii and D. koepferae
  Mol. Biol. Evol. 21: 141-152. (2004).
   
RAMOS-ONSINS, S. E., STRANGER, B. E., MITCHELL-OLDS, T. & AGUADÉ, M.
  Multilocus analysis of variation and speciation in the closely related species Arabidopsis halleri and A. lyrata
  Genetics 166: 373-388 (2004).
   
2003

NAVARRO-SABATÉ, A., AGUADÉ, M. & SEGARRA, C.

  Excess of Nonsynonymous Polymorphism at Acph-1 in Different Gene Arrangements of Drosophila subobscura
  Mol. Biol. Evol. 20: 1833-1843. (2003).
   
PÉREZ, J. A., MUNTÉ, A. ROZAS, J., SEGARRA, C. & AGUADÉ, M.
  Nucleotide polymorphism in the RpII215 gene region of the insular species Drosophila guanche: reduced efficacy of weak selection on synonymous variation
  Mol. Biol. Evol. 20: 1867-1875. (2003).
   
QUESADA, H., RAMÍREZ, U. E. M., ROZAS, J. & AGUADÉ, M.
  Large-Scale Adaptive Hitchhiking upon High Recombination
  Genetics 165: 895-900. (2003).
   
ROZAS, J., SÁNCHEZ-DELBARRIO, J. C., MESSEGUER, X. & ROZAS, R.
  DnaSP, DNA polymorphism analyses by the coalescent and other methods
  Bioinformatics 19: 2496-2497. (2003).
   
SANCHEZ-GRACIA, A., AGUADÉ, M. & ROZAS, J.
  Patterns of Nucleotide Polymorphism and Divergence in the Odorant-Binding Protein Genes OS-E and OS-F: Analysis in the Melanogaster Species Subgroup of Drosophila
  Genetics 165: 1279-1288. (2003).
   
2002
ELSNER, H. A., ROZAS, J. & BLASCZYK, R.
  The nature of introns 4-7 largely reflects the lineage specificity of HLA-A alleles.
  Immunogenetics 7: 447-462 (2002).
   
KUITTINEN, H., AGUADÉ, M., CHARLESWORTH, D., HAAN, A. D. E., LAUGA, B., MITCHELL-OLDS, T., OIKARINEN, S., RAMOS-ONSINS, S., STRANGER, B., VAN TIENDEREN, P. & SAVOLAINEN, O.
  Primers for 22 candidate genes for ecological adaptations in Brassicaceae.
  Mol. Ecol. Notes 2: 258-262 (2002)
   
KUITTINEN, H., SALGUERO, D., & AGUADÉ, M.
  Parallel Patterns of Sequence Variation Within and Between Populations at Three Loci of Arabidopsis thaliana
  Mol. Biol. Evol. 19: 2030-2034. (2002).
   
RAMOS-ONSINS, S. E. & ROZAS, J.
  Statistical properties of new neutrality tests against population growth.
  Mol. Biol. Evol. 19: 2092-2100. (2002).
   
   
2001
AGUADÉ, M.
  Nucleotide sequence variation of two genes of the phenylpropanoid pathway, the FAH-1 and F3H genes, in Arabidopsis thaliana.
  Mol. Biol. Evol. 18: 1-9. (2001).
   
AGUADÉ, M.
  Evolució Molecular: El rellotge de la vida
  Mètode, UV 28: 32-35 (2001).
   
KHADEM, M., ROZAS, J., SEGARRA, C., & AGUADÉ, M.
  DNA variation at the rp49 gene region in Drosophila madeirensis and D. subobscura from Madeira: inferences about the origin of an insular endemic species.
  J. Evol. Biol. 14: 379-387. (2001).
   
MUNTÉ, A., AGUADÉ, M. & SEGARRA, C.
  Changes in the recombinational environment affect divergence at the yellow gene in Drosophila.
  Mol. Biol. Evol. 18: 1045-1056. (2001).
   
ROZAS, J., GULLAUD, M., BLANDIN, G. & AGUADÉ, M.
  DNA variation at the rp49 gene region of Drosophila simulans: Evolutionary inferences from an unusual haplotype structure.
  Genetics 158: 1147-1155. (2001).
   

Last updated: July 27, 2009