Selected Publications2012→2010
Alvarez-Ponce, D., Guirao-Rico, S., Orengo, D. J., Segarra, C., Rozas, J. and Aguadé, M. J. 2012. Molecular population genetics of the insulin/TOR signal transduction pathway: A network-level analysis in Drosophila melanogaster. Mol. Biol. Evol. 29: 123-132.
Eirín-López, J. M., Rebordinos, L., Rooney, A. P. and Rozas, J. 2012. The birth-and-death evolution of multigene families revisited. In Garrido-Ramos, M. A (ed.). Genomy Dynamics, Vol 7. Repetitive DNA. Karguer Pub. (in press).
Librado, P., Vieira, F. G. and Rozas, J. 2012. BadiRate: Estimating Family Turnover Rates by Likelihood-Based Methods. Bioinformatics 28: 279-281
Mackay, T. F. C. et al. 2012. The Drosophila melanogaster Genetic Reference Panel. Nature (in press).
Ramia, M., Librado, P., Casillas, S., Rozas, J. and Barbadilla, A. 2012. PopDrowser: the Population Drosophila Browser. Bioinformatics 28: doi: 10.1093/bioinformatics/btr691.
Rozas, J. 2012. Análisis de la variabilidad genética y filogenias intraespecíficas. In Vargas, P. and Zardoya, R. (eds.). El árbol de la vida: sistemática y evolución. Editorial Reverté. (in press).
Yeh, S-D., et al. 2012. Functional evidence that a recently evolved Drosophila sperm-specific gene boosts sperm competition. Proc. Natl. Acad. Sci. USA. (in press).
Alvarez-Ponce, D., Aguadé, M. and Rozas, J. 2011. Comparative genomics of the vertebrate insulin/TOR signal transduction pathway: A network-level analysis of selective pressures. Genome Biol. Evol. 3: 87-101.
Alvarez-Presas, M., Carbayo, F., Rozas, J. and Riutort, M. 2011. Land planarians (Platyhelminthes) as a model organism for fine-scale phylogeographic studies: Understanding patterns of biodiversity in the Brazilian Atlantic Forest hotspot. J. Evol. Biol. 24: 887-896.
Sánchez-Gracia, A. and Rozas, J. 2011. Molecular population genetics of the Odorant-Binding Protein 83 genomic region in Drosophila subobscura and D. guanche: Contrasting the effects of natural selection and gene arrangement expansion in the patterns of nucleotide variation. Heredity 106: 191-201.
Sánchez-Gracia, A., Vieira, F. G., Almeida, F. C. and Rozas, J. 2011. Comparative Genomics of the Major Chemosensory Gene Families in Arthropods. In Encyclopedia of Life Sciences (ELS). John Wiley & Sons, Ltd: Chichester.
Vieira, F. G. and Rozas, J. 2011. Comparative genomics of the Odorant-Binding and Chemosensory Protein gene families across the Arthropoda: Origin and evolutionary history of the chemosensory system. Genome Biol. Evol. 3: 476-490.
Alvarez-Presas, M., Carbayo, F., Rozas, J. and Riutort, M. 2010. Planarias terrestres, Mata Atlántica y biodiversidad. Quercus 291: 80-81.
Carbayo, F., Alvarez-Presas, M., Rozas, J. and Riutort, M. 2010. Planárias terrestres: modelo de estudo para a proteção da mata atlântica no corredor da serra do Mar. Ciência Hoje 45 (267): 44-49.
Kirkness, E. F. et al. 2010. Genome sequences of the human body louse and its primary endosymbiont provides insights into the permanent parasitic lifestyle. Proc. Natl. Acad. Sci. USA. 107: 12168-12173.
Pérez-Alquicira, J., Martínez-Meyer, E., Molina-Freaner, F. E., Piñero, D., Rozas, J., Weller, S. G. and Domínguez, C. A. 2010. The role of historical factors and natural selection in the evolution of breeding systems of Oxalis alpina in the Sonoran desert “Sky Islands”. J. Evol. Biol. 23: 2163-2175.
Richards, S. et al. The International Aphid Genomics Consortium. 2010. Genome Sequence of the Pea Aphid Acyrthosiphon pisum. PLoS Biol. 8: e1000313.
Rozas, J. 2010. In La teoria de l'evolució 150 anys després, Institut Municipal de Barcelona i Museu de Ciències Naturals de Barcelona, Barcelona.
Zhou, J.-J., Vieira, F. G., He, X.-L., Smadja, C., Liu, R., Rozas, J. and Field, L. M. 2010. Genome annotation and comparative analyses of the odorant-binding proteins and chemosensory proteins in the pea aphid Acyrthosiphon pisum. Insect Mol. Biol. 19 (Suppl. 2): 113-122.
2009→2001
Alvarez-Ponce, D., Aguadé, M. and Rozas, J. 2009. Network-level molecular evolutionary analysis of the insulin/TOR signal transduction pathway across 12 Drosophila genomes. Genome Res. 19: 234-242.
Librado, P. and Rozas, J. 2009. DnaSP v5: A software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25: 1451-1452.
Rozas, J. 2009. Bioinformática y Evolución Molecular. Ambiociencias Dic-2009: 92-96.
Rozas, J. 2009. DNA Sequence Polymorphism Analysis using DnaSP. Pp. 337-350. In Posada, D. (ed.) Bioinformatics for DNA Sequence Analysis; Methods in Molecular Biology Series Vol. 537. Humana Press, NJ, USA.
Rozas, J., Sánchez-Gracia, A. and Vieira, F. G. 2009. Evolución molecular y adaptación en las familias multigénicas del sistema quimiorreceptor de los insectos. Pp. 41-49. In Dopazo, H. and Navarro, A. (eds). Evolución y Adaptación. 150 años después del Origen de las Especies. Sociedad Española de Biología Evolutiva.
Sánchez-Gracia, A., Vieira, F. G. and Rozas, J. 2009. Molecular evolution of the major chemosensory gene families in insects. Heredity 103: 208-216.
Sánchez-Gracia, A. and Rozas, J. 2008. Divergent evolution and molecular adaptation in the Drosophila Odorant-Binding Protein family: Inferences from the sequence variation at the OS-E and OS-F genes. BMC Evol. Biol. 8: 323.
Ramirez-Soriano, A., Ramos-Onsins, S. E., Rozas, J., Calafell, F. and Navarro, A. 2008. Statistical Power Analysis of Neutrality Tests Under Demographic Expansions, Contractions and Bottlenecks With Recombination. Genetics 179: 555-567.
Andrés, O., Kellermann, T., López-Giráldez, F., Rozas, J., Domingo-Roura X. and Bosch, M. 2008. RPS4Y gene family evolution in primates. BMC Evol. Biol. 8: 142.
Clark, A. G. et al. 2007. Evolution of genes and genomes on the Drosophila phylogeny. Nature 450: 203-218.
Vieira, F. G., Sánchez-Gracia, A. and Rozas, J. 2007. Comparative genomic analysis of the Odorant-Binding Protein family in 12 Drosophila genomes: Purifying selection and birth-and-death evolution. Genome Biol. 8: R235.
Sánchez-Gracia, A. and Rozas, J. 2007. Unusual pattern of nucleotide sequence variation at the OS-E and OS-F genomic regions of Drosophila simulans. Genetics 175: 1923-1935.
Ojeda, A., Rozas, J. Folch, J. M. and Perez-Enciso, M. 2006. Unexpected high polymorphism at FABP4 gene unveils a complex history for pig populations. Genetics 174: 2119-2127.
Hutter, S., A. J. Vilella and J. Rozas. 2006. Genome-Wide DNA Polymorphism Analyses using VariScan. BMC Bioinformatics 7: 409.
Quesada, H., S. E. Ramos-Onsins, J. Rozas and M. Aguadé. 2006. Positive Selection Versus Demography: Evolutionary Inferences Based on an Unusual Haplotype Structure in Drosophila simulans. Mol. Bio. Evol. 23: 1643-1647.
Vilella, A. J., Blanco-García, A., Hutter, S. and Rozas, J. 2005. VariScan: Analysis of evolutionary patterns from large-scale DNA sequence polymorphism data. Bioinformatics 21: 2791-2793.
Munté, A., Rozas, J., Aguadé, M. and Segarra, C. 2005. Chromosomal inversion polymorphism leads to extensive genetic structure: a multilocus survey in Drosophila subobscura. Genetics 169: 1573-1581.
Aguadé, M., Rozas, J. and Segarra, C. 2004. Inferring the action of natural selection from DNA sequence comparisons: data from Drosophila. Pp. 11-19 in Moya, A. and Font, E. (eds.) Evolution: from Molecules to Ecosystems. Oxford Univ. Press.
Sánchez-Gracia, A., Aguadé, M. and Rozas, J. 2003. Patterns of Nucleotide Polymorphism and Divergence in the Odorant-Binding Protein Genes OS-E and OS-F: Analysis in the Melanogaster Species Subgroup of Drosophila. Genetics 165: 1279-1288.
Rozas, J., Sánchez-DelBarrio, J. C., Messeguer, X. and Rozas, R. 2003. DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19: 2496-2497.
Quesada, H., ramírez, U. E. M., Rozas, J. and Aguadé, M. 2003. Large-Scale Adaptive Hitchhiking upon High Recombination. Genetics 165: 895-900.
Pérez, J. A., Munté, A. Rozas, J., Segarra, C. and Aguadé, M. 2003. Nucleotide polymorphism in the RpII215 gene region of the insular species Drosophila guanche: reduced efficacy of weak selection on synonymous variation. Mol. Biol. Evol. 20: 1867-1875.
Ramos-Onsins, S. E. and Rozas, J. 2002. Statistical properties of new neutrality tests against population growth. Mol. Biol. Evol. 19: 2092-2100. (Article in PDF-format; 921 KB).
Rozas, J., M.Gullaud, G. Blandin and M. Aguadé. 2001. DNA variation at the rp49 gene region of Drosophila simulans: Evolutionary inferences from an unusual haplotype structure. Genetics 158: 1147-1155. (Article in PDF-format; 234 KB).
Khadem, M., J.
Rozas, C. Segarra and M. Aguadé. 2001. DNA variation at the rp49
gene region in Drosophila madeirensis and D. subobscura from
Madeira: inferences about the origin of an insular endemic species. J. Evol.
Biol. 14: 379-387. (Article in PDF-format; 749
KB).
1990-2000
Rozas, J. M. Hernández, V. M. Cabrera, A. Prevosti. 1990. Colonization of America by Drosophila subobscura: Effect of the founder event on the mitochondrial DNA polymorphism. Mol. Biol. Evol. 7: 103-109.
Rozas, J. and M. Aguadé. 1990. Evidence of extensive genetic exchange in the rp49 region among polymorphic chromosome inversions in Drosophila subobscura. Genetics 126: 417-426.
Rozas, J. and M. Aguadé. 1991. Study of an isolated population at the nucleotide level: rp49 region of a Canarian population of Drosophila subobscura. Mol. Biol. Evol. 8: 202-211.
Rozas, J. 1991. A program to optimize the design of oligonucleotides for PCR amplification. J. Heredity 82: 84.
Rozas, J. and M. Aguadé.1991. Using restriction-map analysis to characterize the colonization process of Drosophila subobscura on the American continent. I. rp49 region. Mol. Biol. Evol 8: 447-457.
Larruga, J. M., J. Rozas, M. Hernández, A. M. González and V. M. Cabrera.1993. Latitudinal differences in chromosome A, sex linked allozymes, and mitochondrial DNA variation in Drosophila subobscura. Genetica 92: 67-74.
Rozas, J. and M. Aguadé. 1993. Transfer of genetic information in the rp49 region of Drosophila subobscura between different chromosomal gene arrangements. Proc. Natl. Acad. Sci. USA 90: 8083-8087.
Rozas, J. and M. Aguadé. 1994. Gene conversion is involved in the transfer of genetic information between naturally occurring inversions of Drosophila. Proc. Natl. Acad. Sci. USA 91: 11517-11521.
Rozas, J., C. Segarra, C. Zapata and G. Alvarez. 1995. Nucleotide polymorphism at the rp49 region of Drosophila subobscura: Lack of geographic subdivision within chromosomal arrangements in Europe. J. Evol. Biol. 8: 355-367.
Rozas, J. and R. Rozas. 1995. DnaSP, DNA sequence polymorphism: an interactive program for estimating Population Genetics parameters from DNA sequence data. Comput. Applic. Biosci. 11: 621-625.
Betrán, E., J. Rozas, A. Navarro and A. Barbadilla. 1997. The estimation of the number and the length distribution of Gene Conversion Tracts from population DNA sequence data. Genetics 146: 89-99.
Rozas, J. and R. Rozas. 1997. DnaSP version 2.0: a novel software package for extensive molecular population genetics analysis. Comput. Applic. Biosci. 13: 307-311.
Ramos-Onsins, S., C. Segarra, J. Rozas and M. Aguadé. 1998. Molecular and chromosomal phylogeny of the obscura group of Drosophila inferred from sequences of the rp49 gene region. Mol. Phylogenet. Evol. 9: 33-41.
Khadem, M., J. Rozas, C. Segarra, A. Brehm and M. Aguadé. 1998. Tracing the colonization of Madeira and the Canary Islands by Drosophila subobscura through the study of the rp49 gene region. J. Evol. Biol. 11: 439-452. (Article in PDF-format; 188 KB).
Rozas, J., C. Segarra, G. Ribó and M. Aguadé. 1999. Molecular Population Genetics of the rp49 gene region in different chromosomal inversions of Drosophila subobscura. Genetics 151: 189-202. (Article in PDF-format; 875 KB).
Rozas, J. and R. Rozas. 1999. DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis. Bioinformatics 15: 174-175. (Article in PDF-format; 33 KB).