Universitat de Barcelona mlcoalsim Software

 

Sebastian E. Ramos-Onsins* and Thomas Mitchell-Olds**
Previous address: Max-Planck Institute of Chemical Ecology
Present address: *Universitat de Barcelona; **Duke University
 
mlcoalsim : Multilocus Coalescent Simulations
Current Released Version: 1.42 (March 18th, 2008)

The application program mlcoalsim is designed to:
This program is based on a previous version of Hudsonís coalescent program ms (Hudson, 2002) and modified for the above purposes.

Remember: mlcoalsim is optimized for many independent regions, or alternatively, for linked regions when the recombination value is not too large. In case using large recombination values (i.e., large genome regions), ancestral recombination graph (ARG) is a much faster methodology and should be used.
     
Download
        - Complete download: mlcoalsim package, including source files, documentation, examples and executables:
                http://code.google.com/p/mlcoalsim-v1/downloads/list

        - Documentation for mlcoalsim version 1.42:

            manual_mlcoalsim.pdf

        - Related applications: three perl scripts to help in the analyses:

            related applications (zip)

        - mlcoalsim examples: input data files and outputs:

            examples version 1.42 (zip)

        - Previous versions are not mantained anymore.

GNU General Public License
      
     This program is distributed under the GNU General Public License:

        GNU_GPL_License.txt

Bug Reports

    
Please send your questions, comments and bug reports to Sebastian E. Ramos-Onsins at:

       

Reference
      
    Sebastian E. Ramos-Onsins and Thomas Mithell-Olds. mlcoalsim: Multilocus Coalescent Simulations.
      Evolutionary Bioinformatics 2007:2 41-44.




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March 18th, 2008