ADVANCED COURSE

Schedule

Week 1

MONDAY
JUL 1
TUESDAY
Jul 2
WEDNESDAY
Jul 3
THURSDAY
Jul 4
FRIDAY
Jul 5
09:00-09:55
Miquel Arnedo
Welcome
Toni Gabaldón
orthology inference
Marta Casanellas
Models of DNA and protein evolution
General Discussion (I)
10:05-11:00
Marina marcet-houben
Intro to the Cloud
Toni Gabaldón
Orthology Inference
Marta Riutort
Model selection and partitioning scheme
Isabel Sanmartin
Bayesian inference
11:00-11:30
coffee break
coffee break
coffee break
coffee break
11:30-12:30
Cinta Pegueroles
Sanitation, assembly and mapping
Marina Marcet-Houben
Orthology prediction for phylogenomic analyses
MARTA RIUTORT
Model selection and partitioning scheme II
Isabel Sanmartin
Bayesian inference II
12:30-13:30
Cinta Pegueroles
Sanitation, assembly and mapping
Marina Marcet-Houben
Orthology prediction for phylogenomic analyses
Seminar
Isabel Sanmartin
Bayesian inference II
13:30-14:30
lunch
lunch
lunch
lunch
14:30-15:30
Miquel Arnedo
Conceptual framework
Tyler Alioto
Genome assembly and annotation
Seminar
Marta Casanellas
Maximum Likelihood
Rosa Fernández
Sensitivity analysis
15:30-16:00
Coffee Break
coffee break
coffee break
coffee break
coffee break
16:00-18:00
Cinta Pegueroles
Bioinformatics primer
Tyler Alioto
Genome assembly and annotation II
Miquel Arnedo
Introduction to Phylogenies: Parsimony
Jesus Lozano
Phylogenomic inference using ML Approaches
Rosa Fernández
Sensitivity analysis II

Week 2

MONDAY
Jul 8
TUESDAY
Jul 9
WEDNESDAY
Jul 10
THURSDAY
Jul 11
FRIDAY
Jul 12
09:00-09:55
Mireia Coscollá
Microbial Genomics
Seminar 3
Pablo Librado
Demographic inference from Population Genomics data
10:05-11:00
Sandra Álvarez-Carretro
Molecular datiing
Mireia Coscollá
Microbial Genomics
Elena Bosch
Genome-Wide scans for selection
Pablo Librado
Inferring demographic history using ancient and modern genomes
Seminar 4
11:00-11:30
coffee break
coffee break
coffee break
coffee break
coffee break
11:30-12:30
Sandra Álvarez-Carretro
Molecular dating II
Filipe Vieira
Calling variants from NGS data
Elena Bosch
genome-wide scans for selection II
Sara guirao-rico
Adaptive differentiation I
General discussion (II)
12:30-13:30
Sandra Álvarez-Carretro
Molecular dating II
Filipe Vieira
NGS data analysis accounting for genotype uncertainty
Elena Bosch
Genome-Wide scans for selection II
Sara Guirao-Rico
Adaptive differentiation
Visit CNAG - Seminar
Tayler Alioto
13:30-14:30
lunch
lunch
lunch
lunch
Visit cnag
14:30-15:30
Owen Wagensteen
Biodiversity assessment
Sebastian Ramos Onsins
Adaptation Genomics
Oscar Lao
Approximate Bayesian Computation
Miquel Arnedo
Species and speciation
15:30-16:00
coffee break
coffee break
coffee break
coffee break
16:00-18:00
Owen Wagensteen
Metabarcoding Analysis
Sebastian Ramos-Onsins
Modeling complex genomic scenarios
Oscar Lao
ACB in practice
Miquel Arnedo
SPECIES DELIMITATION