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DnaSP v5
J. Rozas, P. Librado, J. C. Sánchez-DelBarrio,
X. Messeguer and R. Rozas
Universitat de Barcelona
Current Released Version: 5.10.00 (September
07, 2009)
DnaSP, DNA Sequence Polymorphism, is a software package for the analysis of nucleotide polymorphism from aligned DNA sequence data. DnaSP can estimate several measures of DNA sequence variation within and between populations (in noncoding, synonymous or nonsynonymous sites, or in various sorts of codon positions), as well as linkage disequilibrium, recombination, gene flow and gene conversion parameters. DnaSP can also carry out several tests of neutrality: Hudson, Kreitman and Aguadé (1987), Tajima (1989), McDonald and Kreitman (1991), Fu and Li (1993), and Fu (1997) tests. Additionally, DnaSP can estimate the confidence intervals of some test-statistics by the coalescent. The results of the analyses are displayed on tabular and graphic form.
Running DnaSP under Windows, Linux and MacIntosh
New features in DnaSP version 5.0
Suggested Citation for DnaSP
Librado, P. and Rozas, J. 2009. DnaSP v5: A software for
comprehensive analysis of DNA polymorphism data. Bioinformatics 25:
1451-1452 | doi: 10.1093/bioinformatics/btp187.
DnaSP Documents and Publications:
Rozas, J. and Rozas, R. 1995. DnaSP, DNA sequence polymorphism: an interactive program for estimating Population Genetics parameters from DNA sequence data. Comput. Applic. Biosci. 11: 621-625.
Rozas, J. and Rozas, R. 1997. DnaSP version 2.0: a novel software package for extensive molecular population genetics analysis. Comput. Applic. Biosci. 13: 307-311.
Rozas, J. and Rozas, R. 1999. DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis. Bioinformatics 15: 174-175.
Rozas, J., Sánchez-DelBarrio, J. C., Messeguer, X. and Rozas, R. 2003. DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19: 2496-2497.
Rozas, J. 2009. DNA Sequence Polymorphism Analysis using DnaSP. Pp. 337-350. In Posada, D. (ed.) Bioinformatics for DNA Sequence Analysis; Methods. In Molecular Biology Series Vol. 537. Humana Press, NJ, USA.
Librado, P. and Rozas, J. 2009. DnaSP v5: A software for
comprehensive analysis of DNA polymorphism data. Bioinformatics 25:
1451-1452 | doi: 10.1093/bioinformatics/btp187.
This is access number
since July 19, 1998
Web Page created on 1997
September 07, 2009