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Natural sciences

Table of contents

Guidelines
>
Writing and model documents
>
Types of document
>
Final projects
>
Natural sciences
Here is the complete table of contents of an English-language TFG on computer science called Protein Classification from Primary Structures in the Context of Database Biocuration (Terpugova, 2017):

Abstract
1
1 Introduction
2
1.1 Motivation and Objectives
3
1.2 Structure
4
2 Background
5
2.1 Protein primary structure classification
6
2.2 G-protein coupled receptors
6
2.3 Data description
8
2.3.1 Class C GPCR data
9
2.3.2 Database changes
10
2.4 Data curation
12
3 Previous Work
12
3.1 Protein sequence similarity measures
15
3.2 Protein sequence classification models
17
3.3 Previous research on GPCR class C
19
4 Methods
20
4.1 Alignment-free sequence transformations
20
4.1.1 Amino-acid composition and diagram composition
20
4.1.2 ACC transformation
21
4.1.3 Distributed representations
26
4.2 Classifiers
26
4.2.1 Support Vector Machines
27
4.2.2 Random Forest
28
4.2.3 Naive Bayes
28
4.3 Visualization techniques
29
4.3.1 PCA
29
4.3.2 T-SNE
30
4.4 Performance metrics
32
5 Experiments and results
33
5.1 Classification with different transformations
35
5.2 Comparison of prot2vec models with fixed hyper-parameters
37
5.3 Hyper-parameter selection for prot2vec and its comparison with ACC
38
5.4 Comparison of different classifiers
40
5.5 Visualization
40
5.5.1 PCA
41
5.5.2 T-SNE
43
6 Conclusion
43
6.1 Summary of Thesis Achievements
44
6.2 Future Work
45
Bibliography
52
Appendices
53
A Results of classification for different transformations
53
B Hyper-parameters comparison for prot2vec trained on GPCRdb
60
C Hyper-parameters comparison for prot2vec trained on Swiss-Prot
63



Finally, if you need to include an index of figures (information organized in charts, graphs, plots or drawings) and tables (information organized in columns and rows), put this on the page following the table of contents. Generally speaking, there is no need for you to include an index for any illustrations in the paper.

InformacióNote that this is just an example of what a table of contents might look like in a publication in the natural sciences.
For the purposes of your Final Project, your faculty will tell you what format you need to follow.
Darrera actualització: 23-2-2023
Impressió del capítol | Impressió de la pàgina
Recommended citation:
«Table of contents» [en línia]. A: Llibre d’estil de la Universitat de Barcelona. Barcelona: Universitat de Barcelona. Serveis Lingüístics. <https://www.ub.edu/llibre-estil/criteri.php?id=3328> [consulta: 20 maig 2024].
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