Highlights

Lenalidomide Stabilizes Protein–Protein Complexes by Turning Labile Intermolecular H-Bonds into Robust Interactions

Miñarro-Lleonar, Marina; Bertran-Mostazo, Andrea; Duro, Jorge; Barril, Xavier; Juárez-Jiménez, Jordi

Lenalidomide Stabilizes Protein–Protein Complexes by Turning Labile Intermolecular H-Bonds into Robust Interactions (Journal Article)

In: Journal of Medicinal Chemistry, vol. 66, no. 9, pp. 6037–6046, 2023, ISSN: 1520-4804.

(Links | BibTeX)

Combining Virtual Reality Visualization with Ensemble Molecular Dynamics to Study Complex Protein Conformational Changes

Juárez-Jiménez, Jordi; Tew, Philip; O′Connor, Michael; Llabrés, Salomé; Sage, Rebecca; Glowacki, David; Michel, Julien

Combining Virtual Reality Visualization with Ensemble Molecular Dynamics to Study Complex Protein Conformational Changes (Journal Article)

In: Journal of Chemical Information and Modeling, vol. 60, no. 12, pp. 6344–6354, 2020, ISSN: 1549-960X.

(Links | BibTeX)

Dynamic design: manipulation of millisecond timescale motions on the energy landscape of cyclophilin A

Juárez-Jiménez, Jordi; Gupta, Arun A.; Karunanithy, Gogulan; Mey, Antonia S. J. S.; Georgiou, Charis; Ioannidis, Harris; Simone, Alessio De; Barlow, Paul N.; Hulme, Alison N.; Walkinshaw, Malcolm D.; Baldwin, Andrew J.; Michel, Julien

Dynamic design: manipulation of millisecond timescale motions on the energy landscape of cyclophilin A (Journal Article)

In: Chemical Science, vol. 11, no. 10, pp. 2670–2680, 2020, ISSN: 2041-6539.

(Links | BibTeX)

Mechanism of the Pseudoirreversible Binding of Amantadine to the M2 Proton Channel

Llabrés, Salomé; Juárez-Jiménez, Jordi; Masetti, Matteo; Leiva, Rosana; Vázquez, Santiago; Gazzarrini, Sabrina; Moroni, Anna; Cavalli, Andrea; Luque, F. Javier

Mechanism of the Pseudoirreversible Binding of Amantadine to the M2 Proton Channel (Journal Article)

In: Journal of the American Chemical Society, vol. 138, no. 47, pp. 15345–15358, 2016, ISSN: 1520-5126.

(Links | BibTeX)

Assessing the Suitability of the Multilevel Strategy for the Conformational Analysis of Small Ligands

Juárez-Jiménez, Jordi; Barril, Xavier; Orozco, Modesto; Pouplana, Ramon; Luque, F. Javier

Assessing the Suitability of the Multilevel Strategy for the Conformational Analysis of Small Ligands (Journal Article)

In: The Journal of Physical Chemistry B, vol. 119, no. 3, pp. 1164–1172, 2014, ISSN: 1520-5207.

(Links | BibTeX)

Synthesis and Multitarget Biological Profiling of a Novel Family of Rhein Derivatives As Disease-Modifying Anti-Alzheimer Agents

Viayna, Elisabet; Sola, Irene; Bartolini, Manuela; Simone, Angela De; Tapia-Rojas, Cheril; Serrano, Felipe G.; Sabaté, Raimon; Juárez-Jiménez, Jordi; Pérez, Belén; Luque, F. Javier; Andrisano, Vincenza; Clos, M. Victòria; Inestrosa, Nibaldo C.; Muñoz-Torrero, Diego

Synthesis and Multitarget Biological Profiling of a Novel Family of Rhein Derivatives As Disease-Modifying Anti-Alzheimer Agents (Journal Article)

In: Journal of Medicinal Chemistry, vol. 57, no. 6, pp. 2549–2567, 2014, ISSN: 1520-4804.

(Links | BibTeX)

Synthesis, Biological Evaluation, and Molecular Modeling of Donepezil and N-[(5-(Benzyloxy)-1-methyl-1H-indol-2-yl)methyl]-N-methylprop-2-yn-1-amine Hybrids as New Multipotent Cholinesterase/Monoamine Oxidase Inhibitors for the Treatment of Alzheimer’s Disease

Bolea, Irene; Juárez-Jiménez, Jordi; Rı́os, Cristóbal; Chioua, Mourad; Pouplana, Ramón; Luque, F. Javier; Unzeta, Mercedes; Marco-Contelles, José; Samadi, Abdelouahid

Synthesis, Biological Evaluation, and Molecular Modeling of Donepezil and N-[(5-(Benzyloxy)-1-methyl-1H-indol-2-yl)methyl]-N-methylprop-2-yn-1-amine Hybrids as New Multipotent Cholinesterase/Monoamine Oxidase Inhibitors for the Treatment of Alzheimer’s Disease (Journal Article)

In: Journal of Medicinal Chemistry, vol. 54, no. 24, pp. 8251–8270, 2011, ISSN: 1520-4804.

(Links | BibTeX)

Full List

Miñarro-Lleonar, Marina; Bertran-Mostazo, Andrea; Duro, Jorge; Barril, Xavier; Juárez-Jiménez, Jordi

Lenalidomide Stabilizes Protein–Protein Complexes by Turning Labile Intermolecular H-Bonds into Robust Interactions (Journal Article)

In: Journal of Medicinal Chemistry, vol. 66, no. 9, pp. 6037–6046, 2023, ISSN: 1520-4804.

(Links | BibTeX)

Scott, Jamie I.; Mendive-Tapia, Lorena; Gordon, Doireann; Barth, Nicole D.; Thompson, Emily J.; Cheng, Zhiming; Taggart, David; Kitamura, Takanori; Bravo-Blas, Alberto; Roberts, Edward W.; Juarez-Jimenez, Jordi; Michel, Julien; Piet, Berber; Vries, I. Jolanda; Verdoes, Martijn; Dawson, John; Carragher, Neil O.; Connor, Richard A. O’; Akram, Ahsan R.; Frame, Margaret; Serrels, Alan; Vendrell, Marc

A fluorogenic probe for granzyme B enables in-biopsy evaluation and screening of response to anticancer immunotherapies (Journal Article)

In: Nature Communications, vol. 13, no. 1, 2022, ISSN: 2041-1723.

(Links | BibTeX)

Codony, Sandra; Pont, Caterina; Griñán-Ferré, Christian; Pede-Mattatelli, Ania Di; Calvó-Tusell, Carla; Feixas, Ferran; Osuna, Sílvia; Jarné-Ferrer, Júlia; Naldi, Marina; Bartolini, Manuela; Loza, María Isabel; Brea, José; Pérez, Belén; Bartra, Clara; Sanfeliu, Coral; Juárez-Jiménez, Jordi; Morisseau, Christophe; Hammock, Bruce D.; Pallàs, Mercè; Vázquez, Santiago; Muñoz-Torrero, Diego

Discovery and In Vivo Proof of Concept of a Highly Potent Dual Inhibitor of Soluble Epoxide Hydrolase and Acetylcholinesterase for the Treatment of Alzheimer’s Disease (Journal Article)

In: Journal of Medicinal Chemistry, vol. 65, no. 6, pp. 4909–4925, 2022, ISSN: 1520-4804.

(Links | BibTeX)

Kowalczyk, Joanna; Grapsi, Ettore; Espargaró, Alba; Caballero, Ana B.; Juárez-Jiménez, Jordi; Busquets, Maria A.; Gamez, Patrick; Sabate, Raimon; Estelrich, Joan

Dual Effect of Prussian Blue Nanoparticles on Aβ40 Aggregation: β-Sheet Fibril Reduction and Copper Dyshomeostasis Regulation (Journal Article)

In: Biomacromolecules, vol. 22, no. 2, pp. 430–440, 2021, ISSN: 1526-4602.

(Links | BibTeX)

Juárez-Jiménez, Jordi; Tew, Philip; O′Connor, Michael; Llabrés, Salomé; Sage, Rebecca; Glowacki, David; Michel, Julien

Combining Virtual Reality Visualization with Ensemble Molecular Dynamics to Study Complex Protein Conformational Changes (Journal Article)

In: Journal of Chemical Information and Modeling, vol. 60, no. 12, pp. 6344–6354, 2020, ISSN: 1549-960X.

(Links | BibTeX)

Kuzmanic, Antonija; Bowman, Gregory R.; Juarez-Jimenez, Jordi; Michel, Julien; Gervasio, Francesco L.

Investigating Cryptic Binding Sites by Molecular Dynamics Simulations (Journal Article)

In: Accounts of Chemical Research, vol. 53, no. 3, pp. 654–661, 2020, ISSN: 1520-4898.

(Links | BibTeX)

Juárez-Jiménez, Jordi; Gupta, Arun A.; Karunanithy, Gogulan; Mey, Antonia S. J. S.; Georgiou, Charis; Ioannidis, Harris; Simone, Alessio De; Barlow, Paul N.; Hulme, Alison N.; Walkinshaw, Malcolm D.; Baldwin, Andrew J.; Michel, Julien

Dynamic design: manipulation of millisecond timescale motions on the energy landscape of cyclophilin A (Journal Article)

In: Chemical Science, vol. 11, no. 10, pp. 2670–2680, 2020, ISSN: 2041-6539.

(Links | BibTeX)

Simone, Alessio De; Georgiou, Charis; Ioannidis, Harris; Gupta, Arun A.; Juárez-Jiménez, Jordi; Doughty-Shenton, Dahlia; Blackburn, Elizabeth A.; Wear, Martin A.; Richards, Jonathan P.; Barlow, Paul N.; Carragher, Neil; Walkinshaw, Malcolm D.; Hulme, Alison N.; Michel, Julien

A computationally designed binding mode flip leads to a novel class of potent tri-vector cyclophilin inhibitors (Journal Article)

In: Chemical Science, vol. 10, no. 2, pp. 542–547, 2019, ISSN: 2041-6539.

(Links | BibTeX)

Alencar, Nelson; Sola, Irene; Linares, María; Juárez-Jiménez, Jordi; Pont, Caterina; Viayna, Antonio; Vílchez, David; Sampedro, Cristina; Abad, Paloma; Pérez-Benavente, Susana; Lameira, Jerónimo; Bautista, José M.; Muñoz-Torrero, Diego; Luque, F. Javier

First homology model of Plasmodium falciparum glucose-6-phosphate dehydrogenase: Discovery of selective substrate analog-based inhibitors as novel antimalarial agents (Journal Article)

In: European Journal of Medicinal Chemistry, vol. 146, pp. 108–122, 2018, ISSN: 0223-5234.

(Links | BibTeX)

Mey, Antonia S. J. S.; Jiménez, Jordi Juárez; Michel, Julien

Impact of domain knowledge on blinded predictions of binding energies by alchemical free energy calculations (Journal Article)

In: Journal of Computer-Aided Molecular Design, vol. 32, no. 1, pp. 199–210, 2017, ISSN: 1573-4951.

(Links | BibTeX)

Llona-Minguez, Sabin; Fayezi, Shabnam; Alihemmati, Alireza; Juárez-Jiménez, Jordi; Piedrafita, F. Javier; Helleday, Thomas

Tetrahydrobenzothiophene carboxamides: Beyond the kinase domain and into the fatty acid realm (Journal Article)

In: Bioorganic & Medicinal Chemistry Letters, vol. 27, no. 18, pp. 4462–4466, 2017, ISSN: 0960-894X.

(Links | BibTeX)

Pietro, Ornella Di; Juárez-Jiménez, Jordi; Muñoz-Torrero, Diego; Laughton, Charles A.; Luque, F. Javier

Unveiling a novel transient druggable pocket in BACE-1 through molecular simulations: Conformational analysis and binding mode of multisite inhibitors (Journal Article)

In: PLOS ONE, vol. 12, no. 5, pp. e0177683, 2017, ISSN: 1932-6203.

(Links | BibTeX)

Delcanale, P.; Rodríguez-Amigo, B.; Juárez-Jiménez, J.; Luque, F. J.; Abbruzzetti, S.; Agut, M.; Nonell, S.; Viappiani, C.

Tuning the local solvent composition at a drug carrier surface: the effect of dimethyl sulfoxide/water mixture on the photofunctional properties of hypericin–β-lactoglobulin complexes (Journal Article)

In: Journal of Materials Chemistry B, vol. 5, no. 8, pp. 1633–1641, 2017, ISSN: 2050-7518.

(Links | BibTeX)

Llabrés, Salomé; Juárez-Jiménez, Jordi; Masetti, Matteo; Leiva, Rosana; Vázquez, Santiago; Gazzarrini, Sabrina; Moroni, Anna; Cavalli, Andrea; Luque, F. Javier

Mechanism of the Pseudoirreversible Binding of Amantadine to the M2 Proton Channel (Journal Article)

In: Journal of the American Chemical Society, vol. 138, no. 47, pp. 15345–15358, 2016, ISSN: 1520-5126.

(Links | BibTeX)

Pietro, Ornella Di; Alencar, Nelson; Esteban, Gerard; Viayna, Elisabet; Szałaj, Natalia; Vázquez, Javier; Juárez-Jiménez, Jordi; Sola, Irene; Pérez, Belén; Solé, Montse; Unzeta, Mercedes; Muñoz-Torrero, Diego; Luque, F. Javier

Design, synthesis and biological evaluation of N-methyl-N-[(1,2,3-triazol-4-yl)alkyl]propargylamines as novel monoamine oxidase B inhibitors (Journal Article)

In: Bioorganic & Medicinal Chemistry, vol. 24, no. 20, pp. 4835–4854, 2016, ISSN: 0968-0896.

(Links | BibTeX)

Mey, Antonia S. J. S.; Juárez-Jiménez, Jordi; Hennessy, Alexis; Michel, Julien

Blinded predictions of binding modes and energies of HSP90-α ligands for the 2015 D3R grand challenge (Journal Article)

In: Bioorganic & Medicinal Chemistry, vol. 24, no. 20, pp. 4890–4899, 2016, ISSN: 0968-0896.

(Links | BibTeX)

Rey-Carrizo, Matias; Gazzarrini, Sabrina; Llabrés, Salomé; Frigolé-Vivas, Marta; Juárez-Jiménez, Jordi; Font-Bardia, Mercè; Naesens, Lieve; Moroni, Anna; Luque, F. Javier; Vázquez, Santiago

New polycyclic dual inhibitors of the wild type and the V27A mutant M2 channel of the influenza A virus with unexpected binding mode (Journal Article)

In: European Journal of Medicinal Chemistry, vol. 96, pp. 318–329, 2015, ISSN: 0223-5234.

(Links | BibTeX)

Rodríguez-Amigo, Beatriz; Delcanale, Pietro; Rotger, Gabriel; Juárez-Jiménez, Jordi; Abbruzzetti, Stefania; Summer, Andrea; Agut, Montserrat; Luque, F. Javier; Nonell, Santi; Viappiani, Cristiano

The complex of hypericin with β-lactoglobulin has antimicrobial activity with potential applications in dairy industry (Journal Article)

In: Journal of Dairy Science, vol. 98, no. 1, pp. 89–94, 2015, ISSN: 0022-0302.

(Links | BibTeX)

Juárez-Jiménez, Jordi; Barril, Xavier; Orozco, Modesto; Pouplana, Ramon; Luque, F. Javier

Assessing the Suitability of the Multilevel Strategy for the Conformational Analysis of Small Ligands (Journal Article)

In: The Journal of Physical Chemistry B, vol. 119, no. 3, pp. 1164–1172, 2014, ISSN: 1520-5207.

(Links | BibTeX)

Pietro, Ornella Di; Pérez-Areales, F. Javier; Juárez-Jiménez, Jordi; Espargaró, Alba; Clos, M. Victòria; Pérez, Belén; Lavilla, Rodolfo; Sabaté, Raimon; Luque, F. Javier; Muñoz-Torrero, Diego

Tetrahydrobenzo[h][1,6]naphthyridine-6-chlorotacrine hybrids as a new family of anti-Alzheimer agents targeting β-amyloid, tau, and cholinesterase pathologies (Journal Article)

In: European Journal of Medicinal Chemistry, vol. 84, pp. 107–117, 2014, ISSN: 0223-5234.

(Links | BibTeX)

Rey-Carrizo, Matias; Barniol-Xicota, Marta; Ma, Chunlong; Frigolé-Vivas, Marta; Torres, Eva; Naesens, Lieve; Llabrés, Salomé; Juárez-Jiménez, Jordi; Luque, Francisco J.; DeGrado, William F.; Lamb, Robert A.; Pinto, Lawrence H.; Vázquez, Santiago

Easily Accessible Polycyclic Amines that Inhibit the Wild-Type and Amantadine-Resistant Mutants of the M2 Channel of Influenza A Virus (Journal Article)

In: Journal of Medicinal Chemistry, vol. 57, no. 13, pp. 5738–5747, 2014, ISSN: 1520-4804.

(Links | BibTeX)

Viayna, Elisabet; Sola, Irene; Bartolini, Manuela; Simone, Angela De; Tapia-Rojas, Cheril; Serrano, Felipe G.; Sabaté, Raimon; Juárez-Jiménez, Jordi; Pérez, Belén; Luque, F. Javier; Andrisano, Vincenza; Clos, M. Victòria; Inestrosa, Nibaldo C.; Muñoz-Torrero, Diego

Synthesis and Multitarget Biological Profiling of a Novel Family of Rhein Derivatives As Disease-Modifying Anti-Alzheimer Agents (Journal Article)

In: Journal of Medicinal Chemistry, vol. 57, no. 6, pp. 2549–2567, 2014, ISSN: 1520-4804.

(Links | BibTeX)

Juárez-Jiménez, Jordi; Mendes, Eduarda; Galdeano, Carles; Martins, Carla; Silva, Daniel B.; Marco-Contelles, José; Carreiras, Maria Carmo; Luque, F. Javier; Ramsay, Rona R.

Exploring the structural basis of the selective inhibition of monoamine oxidase A by dicarbonitrile aminoheterocycles: Role of Asn181 and Ile335 validated by spectroscopic and computational studies (Journal Article)

In: Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics, vol. 1844, no. 2, pp. 389–397, 2014, ISSN: 1570-9639.

(Links | BibTeX)

Pietro, Ornella Di; Viayna, Elisabet; Vicente-García, Esther; Bartolini, Manuela; Ramón, Rosario; Juárez-Jiménez, Jordi; Clos, M. Victòria; Pérez, Belén; Andrisano, Vincenza; Luque, F. Javier; Lavilla, Rodolfo; Muñoz-Torrero, Diego

1,2,3,4-Tetrahydrobenzo[h][1,6]naphthyridines as a new family of potent peripheral-to-midgorge-site inhibitors of acetylcholinesterase: Synthesis, pharmacological evaluation and mechanistic studies (Journal Article)

In: European Journal of Medicinal Chemistry, vol. 73, pp. 141–152, 2014, ISSN: 0223-5234.

(Links | BibTeX)

Bolea, Irene; Juárez-Jiménez, Jordi; Rı́os, Cristóbal; Chioua, Mourad; Pouplana, Ramón; Luque, F. Javier; Unzeta, Mercedes; Marco-Contelles, José; Samadi, Abdelouahid

Synthesis, Biological Evaluation, and Molecular Modeling of Donepezil and N-[(5-(Benzyloxy)-1-methyl-1H-indol-2-yl)methyl]-N-methylprop-2-yn-1-amine Hybrids as New Multipotent Cholinesterase/Monoamine Oxidase Inhibitors for the Treatment of Alzheimer’s Disease (Journal Article)

In: Journal of Medicinal Chemistry, vol. 54, no. 24, pp. 8251–8270, 2011, ISSN: 1520-4804.

(Links | BibTeX)

Duque, María D.; Ma, Chunlong; Torres, Eva; Wang, Jun; Naesens, Lieve; Juárez-Jiménez, Jordi; Camps, Pelayo; Luque, F. Javier; DeGrado, William F.; Lamb, Robert A.; Pinto, Lawrence H.; Vázquez, Santiago

Exploring the Size Limit of Templates for Inhibitors of the M2 Ion Channel of Influenza A Virus (Journal Article)

In: Journal of Medicinal Chemistry, vol. 54, no. 8, pp. 2646–2657, 2011, ISSN: 1520-4804.

(Links | BibTeX)