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Munoz-Ruiz, P
,
Rubio L
,
Garcia-Palomero E
,
Dorronsoro I
,
del Monte-Millan M
,
Valenzuela R
,
Usan P
,
de Austria C
,
Bartolini M
,
Andrisano V
et al.
. 2005.
Design, synthesis, and biological evaluation of dual binding site acetylcholinesterase inhibitors: new disease-modifying agents for Alzheimer's disease
.
Journal of medicinal chemistry. 48(23):7223-7233.
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Munoz-Muriedas, J
,
Perspicace S
,
Bech N
,
Guccione S
,
Orozco M
,
Luque FJ
. 2005.
Hydrophobic molecular similarity from MST fractional contributions to the octanol/water partition coefficient
.
Journal of computer-aided molecular design. 19(6):401-419.
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Munoz-Muriedas, J
,
Lopez JM
,
Orozco M
,
Luque FJ
. 2004.
Molecular modelling approaches to the design of acetylcholinesterase inhibitors: new challenges for the treatment of Alzheimer's disease
.
Current pharmaceutical design. 10(25):3131-3140.
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Munoz-Muriedas, J
,
Barril X
,
Lopez JM
,
Orozco M
,
Luque FJ
. 2007.
A hydrophobic similarity analysis of solvation effects on nucleic acid bases
.
Journal of molecular modeling. 13(2):357-365.
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Munoz-Losa, A
,
Curutchet C
,
Fdez Galvan I
,
Mennucci B
. 2008.
Quantum mechanical methods applied to excitation energy transfer: A comparative analysis on excitation energies and electronic couplings
.
Journal of Chemical Physics. 129(3)
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Munoz-Losa, A
,
Curutchet C
,
Krueger BP
,
Hartsell LR
,
Mennucci B
. 2009.
Fretting about FRET: Failure of the Ideal Dipole Approximation
.
Biophysical Journal. 96(12):4779-4788.
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Munoz, J
,
Barril X
,
Hernandez B
,
Orozco M
,
Luque FJ
. 2002.
Hydrophobic similarity between molecules: a MST-based hydrophobic similarity index
.
Journal of computational chemistry. 23(5):554-563.
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Morreale, A
,
de la Cruz X
,
Meyer T
,
Gelpi JL
,
Luque FJ
,
Orozco M
. 2005.
Partition of protein solvation into group contributions from molecular dynamics simulations
.
Proteins. 58(1):101-109.
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Morreale, A
,
de la Cruz X
,
Meyer T
,
Gelpi JL
,
Luque FJ
,
Orozco M
. 2004.
Linear response theory: an alternative to PB and GB methods for the analysis of molecular dynamics trajectories?
Proteins. 57(3):458-467.
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Morreale, A
,
Gelpi JL
,
Luque FJ
,
Orozco M
. 2003.
Continuum and discrete calculation of fractional contributions to solvation free energy
.
Journal of computational chemistry. 24(13):1610-1623.
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Montero, MT
,
Pouplana R
,
Valls O
,
Garcia S
. 1986.
On the binding of cinmetacin and indomethacin to human serum albumin
.
The Journal of pharmacy and pharmacology. 38(12):925-927.
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Mirkovic, T
,
Doust AB
,
Kim J
,
Wilk KE
,
Curutchet C
,
Mennucci B
,
Cammi R
,
Curmi PMG
,
Scholes GD
. 2007.
Ultrafast light harvesting dynamics in the cryptophyte phycocyanin 645
.
Photochemical & Photobiological Sciences. 6(9):964-975.
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Mennucci, B
,
Curutchet C
. 2011.
The role of the environment in electronic energy transfer: a molecular modeling perspective
.
Physical Chemistry Chemical Physics. 13(24):11538-11550.
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Martinez, A
,
Alonso M
,
Castro A
,
Dorronsoro I
,
Gelpi JL
,
Luque FJ
,
Perez C
,
Moreno FJ
. 2005.
SAR and 3D-QSAR studies on thiadiazolidinone derivatives: exploration of structural requirements for glycogen synthase kinase 3 inhibitors
.
Journal of medicinal chemistry. 48(23):7103-7112.
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Martin-Santamaria, S
,
Munoz-Muriedas J
,
Luque FJ
,
Gago F
. 2004.
Modulation of binding strength in several classes of active site inhibitors of acetylcholinesterase studied by comparative binding energy analysis
.
Journal of medicinal chemistry. 47(18):4471-4482.
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Marti, MA
,
Capece L
,
Bidon-Chanal A
,
Crespo A
,
Guallar V
,
Luque FJ
,
Estrin DA
. 2008.
Nitric oxide reactivity with globins as investigated through computer simulation
.
Methods in enzymology. 437:477-498.
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Marti, MA
,
Bidon-Chanal A
,
Crespo A
,
Yeh SR
,
Guallar V
,
Luque FJ
,
Estrin DA
. 2008.
Mechanism of product release in NO detoxification from Mycobacterium tuberculosis truncated hemoglobin N
.
Journal of the American Chemical Society. 130(5):1688-1693.
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Marco-Contelles, J
,
Leon R
,
de los Rios C
,
Samadi A
,
Bartolini M
,
Andrisano V
,
Huertas O
,
Barril X
,
Luque FJ
,
Rodriguez-Franco MI
et al.
. 2009.
Tacripyrines, the first tacrine-dihydropyridine hybrids, as multitarget-directed ligands for the treatment of Alzheimer's disease
.
Journal of medicinal chemistry. 52(9):2724-2732.
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Marco, JL
,
de los Rios C
,
Garcia AG
,
Villarroya M
,
Carreiras MC
,
Martins C
,
Eleuterio A
,
Morreale A
,
Orozco M
,
Luque FJ
. 2004.
Synthesis, biological evaluation and molecular modelling of diversely functionalized heterocyclic derivatives as inhibitors of acetylcholinesterase/butyrylcholinesterase and modulators of Ca2+ channels and nicotinic receptors
.
Bioorganic & medicinal chemistry. 12(9):2199-2218.
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Marco, E
,
Negri A
,
Luque FJ
,
Gago F
. 2005.
Role of stacking interactions in the binding sequence preferences of DNA bis-intercalators: insight from thermodynamic integration free energy simulations
.
Nucleic acids research. 33(19):6214-6224.
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Manez, AP
,
Lu C
,
Boechi L
,
Marti MA
,
Shepherd M
,
Wilson JL
,
Poole RK
,
Luque FJ
,
Yeh SR
,
Estrin DA
. 2011.
Role of the distal hydrogen-bonding network in regulating oxygen affinity in the truncated hemoglobin III from Campylobacter jejuni
.
Biochemistry. 50(19):3946-3956.
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