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2009
Perez, DI
,
Conde S
,
Perez C
,
Gil C
,
Simon D
,
Wandosell F
,
Moreno FJ
,
Gelpi JL
,
Luque FJ
,
Martinez A
. 2009.
Thienylhalomethylketones: Irreversible glycogen synthase kinase 3 inhibitors as useful pharmacological tools
.
Bioorganic & medicinal chemistry. 17(19):6914-6925.
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Brough, PA
,
Barril X
,
Borgognoni J
,
Chene P
,
Davies NG
,
Davis B
,
Drysdale MJ
,
Dymock B
,
Eccles SA
,
Garcia-Echeverria C
et al.
. 2009.
Combining hit identification strategies: fragment-based and in silico approaches to orally active 2-aminothieno[2,3-d]pyrimidine inhibitors of the Hsp90 molecular chaperone
.
Journal of medicinal chemistry. 52(15):4794-4809.
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Lama, A
,
Pawaria S
,
Bidon-Chanal A
,
Anand A
,
Gelpi JL
,
Arya S
,
Marti M
,
Estrin DA
,
Luque FJ
,
Dikshit KL
. 2009.
Role of Pre-A motif in nitric oxide scavenging by truncated hemoglobin, HbN, of Mycobacterium tuberculosis
.
The Journal of biological chemistry. 284(21):14457-14468.
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Castano, T
,
Wang H
,
Campillo NE
,
Ballester S
,
Gonzalez-Garcia C
,
Hernandez J
,
Perez C
,
Cuenca J
,
Perez-Castillo A
,
Martinez A
et al.
. 2009.
Synthesis, structural analysis, and biological evaluation of thioxoquinazoline derivatives as phosphodiesterase 7 inhibitors
.
ChemMedChem. 4(5):866-876.
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2008
Perissinotti, LL
,
Marti MA
,
Doctorovich F
,
Luque FJ
,
Estrin DA
. 2008.
A microscopic study of the deoxyhemoglobin-catalyzed generation of nitric oxide from nitrite anion
.
Biochemistry. 47(37):9793-9802.
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Svozil, D
,
Sponer JE
,
Marchan I
,
Perez A
,
3rd CTE
,
Forti F
,
Luque FJ
,
Orozco M
,
Sponer J
. 2008.
Geometrical and electronic structure variability of the sugar-phosphate backbone in nucleic acids
.
The journal of physical chemistry.B. 112(27):8188-8197.
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Camps, P
,
Formosa X
,
Galdeano C
,
Gomez T
,
Munoz-Torrero D
,
Scarpellini M
,
Viayna E
,
Badia A
,
Clos MV
,
Camins A
et al.
. 2008.
Novel donepezil-based inhibitors of acetyl- and butyrylcholinesterase and acetylcholinesterase-induced beta-amyloid aggregation
.
Journal of medicinal chemistry. 51(12):3588-3598.
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Eccles, SA
,
Massey A
,
Raynaud FI
,
Sharp SY
,
Box G
,
Valenti M
,
Patterson L
,
de Brandon HA
,
Gowan S
,
Boxall F
et al.
. 2008.
NVP-AUY922: a novel heat shock protein 90 inhibitor active against xenograft tumor growth, angiogenesis, and metastasis
.
Cancer research. 68(8):2850-2860.
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Perez, A
,
Lankas F
,
Luque FJ
,
Orozco M
. 2008.
Towards a molecular dynamics consensus view of B-DNA flexibility
.
Nucleic acids research. 36(7):2379-2394.
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Brough, PA
,
Aherne W
,
Barril X
,
Borgognoni J
,
Boxall K
,
Cansfield JE
,
Cheung KM
,
Collins I
,
Davies NG
,
Drysdale MJ
et al.
. 2008.
4,5-diarylisoxazole Hsp90 chaperone inhibitors: potential therapeutic agents for the treatment of cancer
.
Journal of medicinal chemistry. 51(2):196-218.
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Farrera, JA
,
Canal I
,
Hidalgo-Fernandez P
,
Perez-Garcia ML
,
Huertas O
,
Luque FJ
. 2008.
Towards a tunable tautomeric switch in azobenzene biomimetics: implications for the binding affinity of 2-(4'-hydroxyphenylazo)benzoic acid to streptavidin
.
Chemistry (Weinheim an der Bergstrasse, Germany). 14(7):2277-2285.
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2007
Perez, A
,
Luque FJ
,
Orozco M
. 2007.
Dynamics of B-DNA on the microsecond time scale
.
Journal of the American Chemical Society. 129(47):14739-14745.
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Sharp, SY
,
Prodromou C
,
Boxall K
,
Powers MV
,
Holmes JL
,
Box G
,
Matthews TP
,
Cheung KM
,
Kalusa A
,
James K
et al.
. 2007.
Inhibition of the heat shock protein 90 molecular chaperone in vitro and in vivo by novel, synthetic, potent resorcinylic pyrazole/isoxazole amide analogues
.
Molecular cancer therapeutics. 6(4):1198-1211.
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2006
Huertas, O
,
Poater J
,
Fuentes-Cabrera M
,
Orozco M
,
Sola M
,
Luque FJ
. 2006.
Local aromaticity in natural nucleobases and their size-expanded benzo-fused derivatives
.
The journal of physical chemistry.A. 110(44):12249-12258.
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Noy, A
,
Meyer T
,
Rueda M
,
Ferrer C
,
Valencia A
,
Perez A
,
de la Cruz X
,
Lopez-Bes JM
,
Pouplana R
,
Fernandez-Recio J
et al.
. 2006.
Data mining of molecular dynamics trajectories of nucleic acids
.
Journal of Biomolecular Structure & Dynamics. 23(4):447-456.
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2005
Martinez, A
,
Alonso M
,
Castro A
,
Dorronsoro I
,
Gelpi JL
,
Luque FJ
,
Perez C
,
Moreno FJ
. 2005.
SAR and 3D-QSAR studies on thiadiazolidinone derivatives: exploration of structural requirements for glycogen synthase kinase 3 inhibitors
.
Journal of medicinal chemistry. 48(23):7103-7112.
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Perez, A
,
Sponer J
,
Jurecka P
,
Hobza P
,
Luque FJ
,
Orozco M
. 2005.
Are the hydrogen bonds of RNA (AU) stronger than those of DNA (AT)? A quantum mechanics study
Chemistry (Weinheim an der Bergstrasse, Germany). 11(17):5062-5066.
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Munoz-Muriedas, J
,
Perspicace S
,
Bech N
,
Guccione S
,
Orozco M
,
Luque FJ
. 2005.
Hydrophobic molecular similarity from MST fractional contributions to the octanol/water partition coefficient
.
Journal of computer-aided molecular design. 19(6):401-419.
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Noy, A
,
Perez A
,
Marquez M
,
Luque FJ
,
Orozco M
. 2005.
Structure, recognition properties, and flexibility of the DNA.RNA hybrid
.
Journal of the American Chemical Society. 127(13):4910-4920.
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2004
Amat, M
,
Perez M
,
Llor N
,
Escolano C
,
Luque FJ
,
Molins E
,
Bosch J
. 2004.
Conjugate additions to phenylglycinol-derived unsaturated delta-lactams. Enantioselective synthesis of uleine alkaloids
.
The Journal of organic chemistry. 69(25):8681-8693.
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Perez, A
,
Noy A
,
Lankas F
,
Luque FJ
,
Orozco M
. 2004.
The relative flexibility of B-DNA and A-RNA duplexes: database analysis
.
Nucleic acids research. 32(20):6144-6151.
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2003
Orozco, M
,
Perez A
,
Noy A
,
Luque FJ
. 2003.
Theoretical methods for the simulation of nucleic acids
.
Chemical Society Reviews. 32(6):350-364.
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Ruiz, J
,
Perez C
,
Pouplana R
. 2003.
QSAR study of dual cyclooxygenase and 5-lipoxygenase inhibitors 2,6-di-tert-butylphenol derivatives
.
Bioorganic & medicinal chemistry. 11(19):4207-4216.
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2002
Pouplana, R
,
Lozano JJ
,
Perez C
,
Ruiz J
. 2002.
Structure-based QSAR study on differential inhibition of human prostaglandin endoperoxide H synthase-2 (COX-2) by nonsteroidal anti-inflammatory drugs
.
Journal of computer-aided molecular design. 16(10):683-709.
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Pouplana, R
,
Lozano JJ
,
Ruiz J
. 2002.
Molecular modelling of the differential interaction between several non-steroidal anti-inflammatory drugs and human prostaglandin endoperoxide H synthase-2 (h-PGHS-2)
.
Journal of molecular graphics & modelling. 20(4):329-343.
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